BtaINT0025059 @ bosTau6
Intron Retention
Gene
ENSBTAG00000017840 | BAZ2A
Description
bromodomain adjacent to zinc finger domain, 2A [Source:HGNC Symbol;Acc:HGNC:962]
Coordinates
chr5:57154316-57154656:+
Coord C1 exon
chr5:57154316-57154496
Coord A exon
chr5:57154497-57154596
Coord C2 exon
chr5:57154597-57154656
Length
100 bp
Sequences
Splice sites
5' ss Seq
GAGGTACTA
5' ss Score
6.36
3' ss Seq
GTGTCTCGTTTCTTCTCCAGGTT
3' ss Score
11.3
Exon sequences
Seq C1 exon
ATTGAAAACTGCTTTGGCCAAGCGAACGGGGCGACCTGAGGTAGAGCTACAGGGGCCAGAGGAAGGCCTGGGGCGGAGGCGCAGTTCTCGGATCATGGAGGAGACCAGTGGCATGGAAGAGGAGGAAGAGGAAGAGACTGCAGCTGCTGTCCATGGCCGTAGGGGTCGAAGGGATGGAGAG
Seq A exon
GTACTAGCCCAGACCAAGGAAAGTGGGAGGTGGAAAACATTCTTTCTTTCTCTTGAATCTGATGATTTCCCTTTTTCTCGGTGTCTCGTTTCTTCTCCAG
Seq C2 exon
GTTGATATCACAGCATCTAGCATCCCAGAGCTAGAGCGCCAGATAGAAAAACTGAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017840:ENSBTAT00000038215:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.852 A=NA C2=0.350
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGAAAACTGCTTTGGCCAAG
R:
GCTCAGTTTTTCTATCTGGCGC
Band lengths:
237-337
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]