HsaINT0016798 @ hg38
Intron Retention
Gene
ENSG00000076108 | BAZ2A
Description
bromodomain adjacent to zinc finger domain 2A [Source:HGNC Symbol;Acc:HGNC:962]
Coordinates
chr12:56603359-56603700:-
Coord C1 exon
chr12:56603520-56603700
Coord A exon
chr12:56603419-56603519
Coord C2 exon
chr12:56603359-56603418
Length
101 bp
Sequences
Splice sites
5' ss Seq
GAGGTACTG
5' ss Score
7.67
3' ss Seq
GCCCATGTGTTTCTCCCTAGGTT
3' ss Score
12.07
Exon sequences
Seq C1 exon
GCTGAAAACTGTTCTGGCCAAGCGAACTGGGCGGTCTGAAGTAGAGATGGAAGGGCCAGAGGAATGCCTGGGACGGAGGCGCAGTTCTCGGATCATGGAGGAGACCAGTGGCATGGAAGAAGAGGAAGAAGAGGAGTCTATAGCAGCTGTCCCTGGCCGCAGGGGTCGAAGAGATGGAGAG
Seq A exon
GTACTGGCCCAAGATCAAGGAAAGTGGGAGTTAGAAAATAAATTCCTCTTTCTTGAATCTGATAACCTCCTTTTTCATAATGCCCATGTGTTTCTCCCTAG
Seq C2 exon
GTTGATGCCACAGCATCTAGCATCCCAGAGCTAGAGCGCCAGATAGAAAAACTCAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000076108:ENST00000551812:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.774 A=NA C2=0.390
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAACTGTTCTGGCCAAGCGA
R:
GCTGAGTTTTTCTATCTGGCGC
Band lengths:
234-335
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development