MmuINT0024117 @ mm9
Intron Retention
Gene
ENSMUSG00000040054 | Baz2a
Description
bromodomain adjacent to zinc finger domain, 2A [Source:MGI Symbol;Acc:MGI:2151152]
Coordinates
chr10:127558856-127559183:+
Coord C1 exon
chr10:127558856-127559036
Coord A exon
chr10:127559037-127559123
Coord C2 exon
chr10:127559124-127559183
Length
87 bp
Sequences
Splice sites
5' ss Seq
GAGGTACAG
5' ss Score
6.62
3' ss Seq
GTCCGCTTGTTTCTGTGCAGATT
3' ss Score
9.64
Exon sequences
Seq C1 exon
ACTGAAAACTGCTCTGGCCAAGCGAACTGGGCGGCCTGAGGTTATGATGGAAGGGGCAGAAGACGGCCTAGGACGGAGGCGCAGTTCTCGGATCATGGAGGAAACCAGTGGCATAGAAGAGGAGGAAGAGGAAGAAAATACAACAGCTGTCCATGGCCGCAGGGGTCGAAAAGAAGGAGAG
Seq A exon
GTACAGACCAAAGTCAATTAGAAAGTTTTCATCTTTTTTTTGGATCTGGTAGCTCTCCTTTCTCAATGTCCGCTTGTTTCTGTGCAG
Seq C2 exon
ATTGATGTTGCAGCATCTAGCATTCCAGAGCTAGAGCGCCATATAGAAAAACTCAGTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040054-Baz2a:NM_054078:18
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.803 A=NA C2=0.200
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGATGGAAGGGGCAGAAGACG
R:
TATGGCGCTCTAGCTCTGGAA
Band lengths:
180-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: