DreINT0036838 @ danRer10
Intron Retention
Gene
ENSDARG00000102974 | baz2a
Description
bromodomain adjacent to zinc finger domain, 2A [Source:ZFIN;Acc:ZDB-GENE-041010-202]
Coordinates
chr23:6764065-6766669:-
Coord C1 exon
chr23:6766498-6766669
Coord A exon
chr23:6764128-6766497
Coord C2 exon
chr23:6764065-6764127
Length
2370 bp
Sequences
Splice sites
5' ss Seq
GAGGTACTG
5' ss Score
7.67
3' ss Seq
CATAGATTTTTTTCTGACAGATT
3' ss Score
7.51
Exon sequences
Seq C1 exon
ACTGAAGGCTGCACTGGTGCGCAAGACGGGTCGTCCTGAGGAGGAGCTGGTCTTTGAGGAGCGTCGGCGCAGTGCTCGCGTTGGAGTAGCAGAGGAGGAGAGTATTGAAGAGAGCTGTGTGCTGGAGCGAGGGAGTCGACGCAAGGCCAAAGAGGAGCCCAAACACACTGAG
Seq A exon
GTACTGAACATCTATGTCCCAAACTGGACTTAAGTTGGTAAACTTCAGAATCTTCTGTCCTCATTTACTTGCATTTCATACCTATTTGAGTCTCTTTTTTTTTTTATAGAGATGTTGGACAGTTAAACTAAAGTGATTTTCATGCGCATTTTGTCAGTAAAGCTGGTTCTGGTCAACCTTCAGCATGTGCTTTCAGATAGAGCAGCATTTACTACAGAGGCATAGTTCACCGATAAGCTACGAATAATTGTTCAAATTAATTTAAATGGTTGATAATGACATCGAGATTATCGTTCGATGATAATGACCGCTGTTTTGCATGGCTTCTCTGCTGTGTAGTAAACTGCATGTTAAAAGGATAGTTGCTAGTTCTGTCGCTTTAATGATGAAAGTGCAAGGGTGTGTGCTTGGATGGGATGTCAGATGATAAAGTTTGTTGGATTTAATATTGGTGACTACATCTTGTTTGTTCGTCATTAAATGCAACAGAACTACATACAGTAGTCATGTGATTTATTAGTCATGCTTAATGACAACAATTGAATTTTGTGTTTATAATGAAGCACTCTGAAGATTTCCTGAGTTGTTTCTTCGTGGGTGTTTAAATTTCTGAGCAAGAGCGCCCTCTGGCTTTTAAGAGGAGATTTACCGCTGATCACACAATCGTGCTTCTCTGAAAAGATGTGCATAATAATTACTGCTTTGCTCATTTAGCTTTGCAAAGTTTTATTATTTATTATATTATTATTCAAAAATATTGCCAAGACCTACTTCTGTTTAACACAAAAAAGGAAATTTTAAAGAAAGGTGGAAACTGGCATCTGATTTTTGTGAGCATGTCAGATACAATTCAAATTACAAGCTGTCTACATCTTAGCTAGTTTGCAAAATTTTTTTGTTATATAAAAAATGAGAGCAGCTACTTCTAAAATCATGCTAGAAAAAACAAGCCATCCACTACACATTTCACAAGTGAGTGCTGGATCACTTCTGGAAAACATCTTGACATCCTCAAGATCAGAGTCACTTTCAAAATCATTTACTGGCCAATCCAGCTGTAGAGGACTCCTGGAGTCTTTAACCTGTGAATAGAGCATCAACAATGAGCCACTTCAAGCTCAAGCTATGATTTCAATCATGCTTTTGATTTGAGCTGAGGACATGCTTTATCTGAGGGTTTCATCAACTGTAGGGGAGGTTGTACGGTAAAGAAAGGCTTATATTTAATTTGTTGTATATTTAAAAATGATTATAAAATATTTATTTATACAATAAGCTTTAAGCTGAACACTAGTATGTTCTAAAATATTTAATAAAATATAATGTACTCTCATCATGGCAAAGGCAAAATAAATTAGTTATTAGAAATTAGTCATGTTTAAAAAAATAGTCTCTGTTAAACATCACATGAGAAATATTTGAAAAATGATTGAAATCTTATGCTGTGTTCCCACCAGACGCGGAACGCGCAGTTAAATTGTGCTATTCGCGCGTAAAAAGCCGCGTGAACATTTGAGGTTACTCGCTTCATTCGCGCATCAAACCCCGCTTCATTCGCGTGTCAAATTCACTTCAGAACAGATGCGGATTCGCGTGATGGGCAGGGCTCCTGTCTGCCCCATGACTCTAACTTCATAGCTAAAGGGCTAACATGGATTTTATGAAGAAAATAACAGTGTTTATGTGCTTTATGAAGGATGATAAACAGCGTCAATACGTTTAGGGCCGTGTCTGAGTCCACTACATCCTTTCAGAGGTGCATCCAGCTCTGTGAGCTCATAAACTCCTCCAGAAACTGAACCTGGCAGATGGAGGTTTTCAGCGGTGCTTCTGACTGAGCCCAGCCCAGTTTGATGAACTTCTTGTCGGTGTCTGCTGGGGGATTTCCCTTGGGACACCGACAACAGGCGATACGTCACAATCACCCCCCACAAGAGCAAGCTTCTGATTGGTTAATGCGGCGCGAATGTCCGCTGAAGTTCAGATTTTCGAACTCGAGTGATTAGCGCGAAATGCGCATTAAGCGCGTCAACGCGCAAAATTCGCCAAATGCTCAATTCGCGCCATGCCATTCGCGCCATGCGCACCGCGCAATTCTCGTCATTTGCGCGTATCGCGCCGCAGGATGTCTATTTGCCCGTTTGCATTGACTTAACATGTAAATCACCCGCGCTTGACGCGCATTCCGCGTCTGGTGTGAACGCAGCATAACAGGCTAATCATTTTATCTGTTAACTGGAAACATTTTGTAAATATTCAGCAAAAAATACTTTCCATATAAGTGAAAAAATAACGCACATCTTCTATTGTTTAAGGGGGTGTACAGATTTATGCTGAACATTGTTTTTGACATAGATTTTTTTCTGACAG
Seq C2 exon
ATTGAGAGTCCTAATACCTGCAGTGTTGCTGAGCTGGAGCGCCAGATTGATAAACTAACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000102974:ENSDART00000157828:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.168 A=NA C2=0.209
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]