RnoINT0024800 @ rn6
Intron Retention
Gene
ENSRNOG00000053881 | Baz2a
Description
bromodomain adjacent to zinc finger domain, 2A [Source:RGD Symbol;Acc:1305037]
Coordinates
chr7:2542915-2543255:+
Coord C1 exon
chr7:2542915-2543095
Coord A exon
chr7:2543096-2543195
Coord C2 exon
chr7:2543196-2543255
Length
100 bp
Sequences
Splice sites
5' ss Seq
GAGGTGCAG
5' ss Score
2.03
3' ss Seq
ATCTGCTCGTCTCTGTGCAGGTT
3' ss Score
10.15
Exon sequences
Seq C1 exon
ACTGAAAACTGCCCTAGCCAAGCGAACTGGGCGGCCTGAAGTTATGATGGAAGGGGTAGATGACAGCCTGGGACGGAGGCGCAGCTCTCGGATCATGGAGGAGACCAGTGGCATAGAAGAGGAGGAAGAGGAGGAAAATACAGTAGCTGTTCATGGCCGCAGGGGTCGAAGAGATGGGGAG
Seq A exon
GTGCAGACCAAAGTGGAAGGAGAGGGGGTTGGAAAGTTCACTTTTTCGTTTTTGGATCTGGCAGCTCTCCTTTTCTCATTATCTGCTCGTCTCTGTGCAG
Seq C2 exon
GTTGATGTTGCAGCATCTAGCATCCCAGAGCTAGAGCGCCAGATAGAGAAACTCAGTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000053881:ENSRNOT00000079383:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.639 A=NA C2=0.400
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAAACTGCCCTAGCCAAGC
R:
ACTGAGTTTCTCTATCTGGCGC
Band lengths:
236-336
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]