BtaINT0025081 @ bosTau6
Intron Retention
Gene
ENSBTAG00000020654 | BAZ2B
Description
bromodomain adjacent to zinc finger domain, 2B [Source:HGNC Symbol;Acc:HGNC:963]
Coordinates
chr2:37049076-37049548:+
Coord C1 exon
chr2:37049076-37049184
Coord A exon
chr2:37049185-37049446
Coord C2 exon
chr2:37049447-37049548
Length
262 bp
Sequences
Splice sites
5' ss Seq
AAGGTACAT
5' ss Score
7.87
3' ss Seq
AAAATATGTGATTTTTTCAGTAT
3' ss Score
6.16
Exon sequences
Seq C1 exon
CTGGCAGAGAGAGACAAGAATAAGAAACTTTGGAGGGCGCCTTCAAGGAGAAGTAGCATATTATGCTCCATGTGGAAAGAAACTTAGGCAGTACCCTGAAGTAATAAAG
Seq A exon
GTACATACTTTTCACCAAATAGCACACATTTGGTGCCTATTAAGCTTGCTTATGGGAAAAAAAGTACACTCCTTTGTCAAAGTTCTTTAACACAAAATATTCTCTCGTGTGAGACTAATGAATGTGCTTAACCTAAATTGATCTGTTAAATCCATAGCCCATAATAGAGTATACAAAACCATAGTGTCCTGAAGATAGCTATACATCAAAGCTGGGTTGTAATTATTAAAACCTGAAGTGGAAAAATATGTGATTTTTTCAG
Seq C2 exon
TATCTCAGCAGAAATGGAATAATGGATATCTCAAGGGACAATTTCAGCTTCAGTGCAAAAATAAGAGTGGGTGACTTCTATGAAGCCAGAGATGGACCGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020654:ENSBTAT00000027534:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0142914=MBD=FE(48.0=100)
A:
NA
C2:
PF0142914=MBD=PD(32.0=70.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGCAGAGAGAGACAAGAAT
R:
GCGGTCCATCTCTGGCTTCAT
Band lengths:
209-471
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]