DreINT0036861 @ danRer10
Intron Retention
Gene
ENSDARG00000057782 | baz2ba
Description
bromodomain adjacent to zinc finger domain, 2Ba [Source:ZFIN;Acc:ZDB-GENE-070615-37]
Coordinates
chr6:11724147-11725349:+
Coord C1 exon
chr6:11724147-11724255
Coord A exon
chr6:11724256-11725132
Coord C2 exon
chr6:11725133-11725349
Length
877 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAC
5' ss Score
8.14
3' ss Seq
CTCAGCTCTCTGTTCTTTAGGGT
3' ss Score
9.28
Exon sequences
Seq C1 exon
TTGGCAAAGAGAGACCAGGATAAAAACGGTGGCCGGTCGGCTGCAGGGAGATGTTGCGTATTACTCCCCGTGCGGCAAGCGACTGCGACAGTACCCAGATGTCGTAAAG
Seq A exon
GTAAACTTGACTTGTTTTCCTCACCACTTCTTGCTTCCACCCGCCAACAGCTCAGGAAACCTCACTCCCCATCCACATAAACCCTTTTTCCTCTCCCAGTGCACCGTTGTTAGCAGTTTATTTGGGTAATCTGGTCACTTTAGTTTAGCTGTGCACTGATATGGCAAGTGTGCTAGGCTGCTTTCAGTTTGGTACCATTATAGTGCTAATGGCTCTCTGGATATCCTGTCTGACGAAATCACTATTATTCTCTCTTCTGTAGTATCTGTCCAGATACGGAATAACTGACATCACGCGTGATAATTTTAGCTTCAGTGCAAAAATAAGGGTTGGTGACTTCTATGAAGCCAGAGAAGGACCCCAGGTGAATGCCTTTCATCTCCTCTTTTTTCCTTTTTTTTTGTTCTTTATGTTCTTTTTTTATCTCTGTCTCTCTCGCTCGTATTCTATCACTCTCCCTGTATCTCTCTTTCATCTTGAACAGGGCAGGGAATTTGATTGAACCCCGATAGCCTGAATTTCCCCTTTAAAACTGTAGGGAGTCTGTGCAATAATCAGCGCTGGTTGTTTCCACAGGGTGTTACTTCATGTTTTGTCTGTCCCGTGTGTGCGTGTGTGTTGAAAGAGATTCTTTAGATTAAAGATGCAGAGGAGCGAAAGTTGGACAGTTTGTTGATTCCATTTTAAACTAAAATCCATCTCTTGTTTTATTTTCTTCGCCATTTCCTGCTTTGAATCGATTTTCTAAAATTTGAATATTACCAATCAGAATTTTACCAATTACAAAGTCACCTGATTGTTAGTGATTAAGCCAGACTAAGTGTTTTGTGTTTCCAGCATCATCTTCAGAAGTCTGACTCAGCTCTCTGTTCTTTAG
Seq C2 exon
GGTCTGCAGTGGACTCTTCTGAATGAGGAAGAGGTCATCCCTCATATATTGGCCATGGAGGGGCGGCGAGGTCGCCCGCCCAACTCTGACCGCCAGCAGAGGGGCAGCAGCGAGGGCTCGGGCAGTCGGCGCAGAAAGGGTCGCCCTCCGAATCTAGGAGAGAACGAATTCCCAAGCCCCTCCGAAGCTAAACTACTGCGCAAACTCGAGGCTCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000057782:ENSDART00000151044:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.027 A=NA C2=0.742
Domain overlap (PFAM):
C1:
PF0142914=MBD=FE(48.6=100)
A:
NA
C2:
PF0142914=MBD=PD(23.1=20.5)
Main Inclusion Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGGCAAAGAGAGACCAGGAT
R:
CCTGAGCCTCGAGTTTGCG
Band lengths:
326-1203
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]