GgaINT0050407 @ galGal3
Intron Retention
Gene
ENSGALG00000012579 | BAZ2B
Description
NA
Coordinates
chr7:38223529-38229752:-
Coord C1 exon
chr7:38229644-38229752
Coord A exon
chr7:38223743-38229643
Coord C2 exon
chr7:38223529-38223742
Length
5901 bp
Sequences
Splice sites
5' ss Seq
AAGGTATTA
5' ss Score
7.04
3' ss Seq
ATGTGAAATGTGTCAATTAAAAG
3' ss Score
-7.72
Exon sequences
Seq C1 exon
CTGGCAAAGAGAAACCCGAATAAGAAACTTTGGTGGCCGTCTTCAGGGAGAAGTAGCGTATTTTGCACCTTGTGGAAAGAAGCTGAGGCAATATCCTGAAGTAGTAAAG
Seq A exon
GTATTAAAGTAAATTCTTTTCTTAACTTCTGTGTTCTCATGCTACCAGGCATGTTTGCAATAAAAGAATGCCACTTTTTCCTCCAGTAAAGATCCTTATTTCAAAGTACGTGTTGTGAGGAGATGATAATACTTCTCAGCCTGATTGCTGATTTGGTCTGTATATCACCTTGATCAAATATGCAAATCATTACACTCACAGTTAGCTGTACATCAAAGCTGGGTTGTAATTATTTACAAGCTGAAGTGGAAAAATATGTGATTTTTTCAGTATCTCAGCAGAAATGGAATAATGGATATCTCAAGGGACAATTTCAGCTTCAGTGCAAAAATAGGAGTGGGTGACTTCTATGAAGCCAGAGATGGACCGCAGGTATCTGCTTTTTAAAAAGTAAAGTCTTTGATCCAAGGAACATTAACATAACTTTGGATGAAGTAGTTTTTGCTACAGTCTGAAGCATTTATTGTTTTTTAGATAATTCTTTCTAAAAATTCTGCTTATCTCTTAATAATTCTGAGTTGCTTATGCCTTGATCCCTGGCAGTGTTGAAAACTGCACCTCTCAGTGATTTCAGTAGGAGCTTGCAAGAGTTCAGCATGCCTCATGACCAACTCCGAGCCTGGTTTTGTGTAGTATGAAGGAACTCAGAGTTCCATGTTTTATCTGAGTCAGTATTCAGCTATTTCTGACTGAAACTTGTCTTTCTGTTTTGTAGAAGCCTAGTATTAAGAATCATTTCTGTGTTTGCATTAAATCACGCTGCTTTCATGTATTCATCTTCATAATATGCCTAAAATACATATTTAAATACAAGTGTTTGGTTTATTGGGAAGCACTAGAAACATTAGATCATTAAGGAAGGGAAATCTGAGTATACTGATTATGCTTTACAGTGGCAGCATTATTAGGTGTTGTGTAGAGGTACCACACAAGAATAAGTAATGTTAGAATTCTAAGGTAATTAGTACTTTGATTGATCCATGCGTTATTTCTCTTGTCTGGTCATGTTGCCTTTTCTTTAGGATGTGTGCAAAAGATTTTAGCCTTCAGTCAAAAAAAAAGGTTTTCTTTTTCAAAGTATAAAGCATCTTTATATGGTACTACGGCAGCGTGGATAGGTAACAACACTGTAGTTTTCCCATGTGACTGTGATTCCACATGGAAGTACATAGTATTTGCATAATAAAAATTTGAAAGCTTAACAGCAACTGAGTTCATGGTAAATGTTGGAATATCAGTTCCTTTGTTACCCTGTTAGGTTCTTCATGTGTTTCCCATATTCCTTCTGTAACCTTGGTCCCTTCTTCAGTTCTCTCTTTCTTCCTCTCCTTCGATTCATAATGTTCAGATCTTGCCCTTCTGAGGTGTGGTGGAAGGGCACATTCTTGTAGGCGAGACTGGCAGTGTGCAGCATTGTACATCTCACTGTAGTTTCTGCTTGTATAGTTTGTTTACAATGAGGAGGACAAATTTAAACTGAAATTAATGATGATGCCAGCTACTTGTAAAGAGCCTGTGGCTTTGTTCATCAGTTTGGCCAGCAGGCTTTCAGCTTTATTCTGCTTCCCTGTATAGTTATCTTGTACCTTTGAGATAGCCCTACAGTGTTCCTTCTGGCCTCTAGCTACTTTTTCCAGATGGCAGTGCCAGCTAGATGTCTGGTATCCTCTGTCACAATTGCTAGGCCTGAGCAGATGGCCTCATTGCAGTAGGCTATTGCATAGACCTAAAGGTCAGAAACTAAATTACTGGTGGGATTGGCTGAAACTAGATGATTATTATGGTCCTTTTCAACCCAGGCCATTCTATGATTAGTTTCAACAATGAAGGACAACATTTCAAAATATTATTTTGGTTTCTTCCTCTTTGTGCAGTGACGCTTAGCTTATGTTGAAGCCATTGCATCTTTTATATTGGCACTCATCCTGCTTTTTCTTTTCCCCCCTCCTTTGACATCTAGAAAATTCACAAAATCTCAGATGGTATGTTTTGTATAATAGAAATGTATTCTGGTTCCAATTATATATGTATAAATTCGTGTATAATCCCAAAACATAGGTAGTCAATTATCACCTTCTATGGAGAGAGATGTTATCATACCAGTCTGTAGTTGTCAAAGTTCATTGCAGAGTGCTTGCCCTTGTCACATGCAAATGGAGGAGCACTTGCATGCAGAAATTCTTTATTTCTTGTTTTTATGGTTTTGTATTCTTCAAAATGCAGAGCTGCTGTAATTACATAGTGGCTAAATATGGTGTAGTACATGGCTAATGTTACGGTTATTTGTAGTTTAATACACGATTAAATAAAACTATCAACTTGTATGGTGAGAATTTCACAGCAGTGACATATATGAGAATTAGATTATTCAAGCATGTTTTCTTAAAAGAATATCAAGAGAATGAGTACTCAAAGTAGTGTTTATTCTGTCACATGCATTCTCTTATCAAGAGATTCTTTTTTCCTTGACTTTTGAGCCATCCAAACAGTGAAAGAATTACAAAAGTTGGTGGTAACTTTGCAAGTGTAAGTGCAACAATTGGATTCCAATTTGTTTTGAGCATTAAACTTTATTTGAAACAGAATTAAGGTTATCAACTAGATGTTAGCATGGCAACTGTCAGATGGCCTTTTGAAGTAATTGATGAAGGATGGAATCATGCATGCTTCAGGTTCTGAACTGACATGTATCAGCACACTAGGAAGTGAATTACTGTGCATTTATTCCAGTTGAAAACTCTCCTAGCTCAATGCCATATGAAGGAGAATATCGTGTTGCTATGATGTGCTGCTGCATTCCTCCCCACACCCTCAATTATCACTTAATTTATAAAAGATTTAGGTAATTGAATGATCTTCATCAGCTTGCAGTGTTTTTCTGTGCTTAAAAAAAGAAGATCGAATACCATCAGAAAATCAGTAATAGTTAATCCAGTAAATTTCATTCTGTTCCTCTGTAAGTGCAGTGATTTCAGTGTAAAAGAACGGCCATGCTGGTACAGAACAGGAGTTGTGATGAGTCTTGTGTTCTGTCTCCAGCTGTAGTTCTCAGTGAATGCCTTGGAGAAAATGAAGTTGGCACACCTGTAGAGATAATAACTCCTCCAGTTATCTCAGTATCCATGTATTTTCAGGTACAGGGCTGTCCTGGGACCTATTATATAGTTTGTCTACTCAGTGTCTCTCAGTGGATCTTGTTTAAGCTATTTTTGTGAAATCCTATCTTGAACTTGTGGAAACGTGTTTAATCACAGTGTCTGGCAAGATGTTAAGAAATCTTCTTTACTTTTTTTGAAATGATATTTCTTATTGCTTATTGAATCTTATTCCTGTTAGCTTCTAGGTTATCTTCTCTGAGGATTATGTGACTGTAGTATGCATCTGTAGTCTCTGTGGTACTAGTGATCTCAGAGACGTGTAAATGGAGGTCTGTACATTTGTTATCATTGGTATTATTGACCAGAGAAAATTAAATGGAAAGCAAAAGAGATCTCCATTGCAGGATCCAAAGTACTTGACAGACAGCTGCAGCTTCTTCTGTTTCTTGAATGGGTTTTGGTTTATCTGTTTGCTTTTTTGGTCACATAAAATGTATGAGATTTCATAGGTTCACTGTTGGTGTACGTGATAAGTATGGTATTAAATCTAGCTTAGTTTGCTCAGCTTTATAAACTAAACTTCTGGTAAACTGTAAGGCAGGTACTAAGCAGCAAAATGAACAATGTATACTTCTCTTGTTAGAAAATGACTTAACTTTTTTTTAGGTGTAGACGTGATTATATTTGAAAGCTTTGCAGTGATGTACTGTACATGTCATGATATGATTGTGATTCTGAACAGTTGGTACTTAAGACCATAATAAAGTAGCCCTTGGAATCTCTTTAAACTGAGTGTGAGATGTAATCTTACGATGGTCCTGACTGGGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTCTAATGAATTGTGAAGAATAAGCAAAAAGAATTAAAAATAAATTGACAAAATAAGAAAAAAATGTATTTTATGCTTGCTTCAGTACTTTCTATATGTACTTTCTAATGAGAAAAATTTGGTAATGCAAATCTATTATTTTGCGAAGATATATTTAGTAGAAGTGTTTTATATGCTACCAACATTAATTCTTGATTTAGCAGACATTTTCAAAATCTTGTAACAAACATTCTAGGCTAAATTATGGTGAGGTCTAAAAGGTACTTCTATTTTTTTCCATTTTTTGAAAGTGGTAAAGTCTGTTACATAGAAGCATAGAAACATAGTTCGGGTTGAAAGGGACCTTTAAGATAACTGAGTTCCAGCCCCCTGCTGTAGGCAGGGACACATAGACCGGGTTGCTGATGGCCCCATCCAGCCTGGATACAATTGTGACGTAGGTGGGTGTTTAACCGGGATCAGGTAGGCTGAGCTACTGTTACGTTCAGTAGCTACAATAAACTCCGCTTATTATCAGTTAAATGAAAGTTCTTTCTAACGAAGTATTTCAGTGTTTGCTTTTGAGATTGCATGACAAAGTACTACTCATAGTGAAGGAAGTGGTTCAGTACCTTGCTTCATGCTTTATGAAGTTAGCAAATGTAGTTTCTATAGCTTTTAGTTAAGACAAAGTATGAGGAGTTACAGGCTTCCAGTTTCTTTCAATTCAGTTTGGTGCAGAAATTTTCTAGCACAGGAGGGAGGAAGAACTAAAATGTTCTAAATACTTCAGAATTAAAATGAACCTGTTTTTTTTTTTTTTTGGTACAGTTGCTGTAAAACTAAGATACACATCACACAGAAAAAAGTTTTTGTAGATAGACCCCTGCATTTTGTTCTTCTTTATGGCAGAGTTTCTGTCAATACTTTAAATTGGCAGACTGTGATCCGTACATTGACTTTTTTTGTTTGCATTGAGCAGTGGATTCTCTGAAAGCAATGCAGTTATTTTTTAGTTTATATGATGAGGAAGAATTTGTTTCTGCTTAAATGTGAGTAGAGTATTAAGTAGCGTGGCCTAAATAATTGAAAGTAATGCATCAGTGGCATTGCTACTTTGTTATTATTGTGTATGCCACTGGATAGATTTCAGTATCTTGCATGGTAGTACAGTTTTAAAATGCTTTGTAGTGGCAAGCTGTCAGTATAACATTTCTGTGCATCTTTGAAACGTTGTATGGCCCAGATAGTCCATCTCAGCTCTTCTCTATATGTAATTCATTAGAACTTCATGTATATAGAAATATTTTAATATATATTAAAATATATATTTATATTTTATTTTTACCTTATAAAAGCACACACTCTTCTTGTTCTCAGATGCCTTTTCTTTTCTCTTTTCTTTTTTGATTCTGTGCTTATGATACTTGTATGTGAAATGTGTCAATTAA
Seq C2 exon
AAGGGCGTGCAGTGGTGTCTTCTGAAGGAGGAGGAAGTCGTTCCCTGCATCAGAGCTATGGAAGGGCGTAGAGGACGACCACCAAATCCAGACAGGCAGCATTCTAGAGAGGAGTCAAGAATGAGACGTCGCAAAGGCCGACCTCCAAATGTTGGAAGCACTGAATTTCTAGACAGCACTGATGCGAAGCTTTTAAGAAAGCTACAGGCTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012579:ENSGALT00000037699:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.560
Domain overlap (PFAM):
C1:
PF0142914=MBD=FE(67.9=100)
A:
NA
C2:
PF0142914=MBD=PD(3.8=2.8)
Main Inclusion Isoform:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]