HsaINT0016821 @ hg19
Intron Retention
Gene
ENSG00000123636 | BAZ2B
Description
bromodomain adjacent to zinc finger domain, 2B [Source:HGNC Symbol;Acc:963]
Coordinates
chr2:160284452-160284930:-
Coord C1 exon
chr2:160284822-160284930
Coord A exon
chr2:160284554-160284821
Coord C2 exon
chr2:160284452-160284553
Length
268 bp
Sequences
Splice sites
5' ss Seq
AAGGTACAT
5' ss Score
7.87
3' ss Seq
AAAATATGTGATTTTTTCAGTAT
3' ss Score
6.16
Exon sequences
Seq C1 exon
CTGGCAGAGAGAGACAAGAATAAGAAACTTTGGAGGGCGCCTTCAAGGAGAAGTAGCATATTATGCTCCATGTGGAAAGAAACTTAGGCAGTACCCTGAAGTAATAAAG
Seq A exon
GTACATACTTTTCACCAAATAATGTACATTTGGTGCCTATTAAGCATGATCATGTACAAAAAAAAAGTGTACTCCTTTCTCAGATAAAGTTCCTTGATACTAAATATTCTCTTGTATGGGACTATTGTACTTAACCTAAATTGATCTCCTATAAATTTAGAGCCCCTTGATAGAATATGCAAAACATTAGTGTCCTGAAGCTAGCTATACATCAAAGCTGGGTTGTAATTATTAAAACCTGAAGTGGAAAAATATGTGATTTTTTCAG
Seq C2 exon
TATCTCAGCAGAAATGGAATAATGGATATCTCAAGGGACAATTTCAGCTTCAGTGCAAAAATAAGAGTGGGTGACTTCTATGAAGCCAGAGATGGACCGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000123636-BAZ2B:NM_013450:12
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.003 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF027249=CDC45=FE(30.3=100),PF054707=eIF-3c_N=FE(23.5=100),PF041477=Nop14=FE(29.0=100),PF0142914=MBD=FE(48.0=100)
A:
NA
C2:
PF027249=CDC45=PD(0.1=0.0),PF054707=eIF-3c_N=FE(22.2=100),PF041477=Nop14=PD(6.5=22.9),PF0142914=MBD=PD(33.3=71.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGCAGAGAGAGACAAGAAT
R:
GCGGTCCATCTCTGGCTTCAT
Band lengths:
209-477
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)