BtaINT0025112 @ bosTau6
Intron Retention
Gene
ENSBTAG00000020654 | BAZ2B
Description
bromodomain adjacent to zinc finger domain, 2B [Source:HGNC Symbol;Acc:HGNC:963]
Coordinates
chr2:37146116-37146539:+
Coord C1 exon
chr2:37146116-37146156
Coord A exon
chr2:37146157-37146395
Coord C2 exon
chr2:37146396-37146539
Length
239 bp
Sequences
Splice sites
5' ss Seq
CAGGTATTA
5' ss Score
7.26
3' ss Seq
TCAGACATTATTTTCTTTAGTAT
3' ss Score
3.58
Exon sequences
Seq C1 exon
AAACCTAAAAGAGATGACTCCAAGGACCTAGCTCTTTGCAG
Seq A exon
GTATTATTTCAGTTCTCATGTACTATATATTTAGCTTTCCATTTTATTTGCTTAGAAATCACCTACTATAGTAAGACAACTTTTTGACAGTTTGTATAAATAGGAAATGAAAGTCTATAGTGTATACTTTTAAAGAAGTTAATTTGCATTTTTTACTTGAAAGATTGGAAAGCTAAATTTTTAATAAAAATAGATGTTTCTAAAGCATAGATACTGATTTCAGACATTATTTTCTTTAG
Seq C2 exon
TATGATCCTTACTGAAATGGAAACTCATGAGGATGCATGGCCTTTTCTACTTCCTGTAAACTTGAAACTTGTTCCTGGTTATAAGAAAGTTATTAAGAAGCCTATGGATTTTTCCACAATTAGAGAGAAATTAAGTAGTGGACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020654:ENSBTAT00000027534:43
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.369 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0043920=Bromodomain=PU(1.2=7.1)
A:
NA
C2:
PF0043920=Bromodomain=FE(57.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGAGATGACTCCAAGGACCT
R:
TTTCTCTCTAATTGTGGAAAAATCCA
Band lengths:
164-403
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]