GgaINT0050430 @ galGal3
Intron Retention
Gene
ENSGALG00000012579 | BAZ2B
Description
NA
Coordinates
chr7:38190746-38191837:-
Coord C1 exon
chr7:38191578-38191837
Coord A exon
chr7:38190890-38191577
Coord C2 exon
chr7:38190746-38190889
Length
688 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGA
5' ss Score
9.46
3' ss Seq
TAAATCCTTATTTTATTTAGCAT
3' ss Score
4.53
Exon sequences
Seq C1 exon
GCAAGTGGTCAAACTCTAAAATTAAAAAAACTTCAAATAAAAGGAAAAAAAAGTAATGAACAAAAGAGAGGCAGGAAATTACCAGGAGATACAGAAGATGAAGACTCTGCGACTACTAGTACCTCATTAAAAAGAGGGAAAACAGAACCTAAGAAAAGGAAAATGGATGAAAGTGTTTCTGTAAGCCAAGGAAAACAAGAAAATTTCACTGCTATAAAGAAACCTAAAAGAGATGACTCCAAGGACCTGGCTATATGCAG
Seq A exon
GTATGATCTACCTTCTTGTAAAGCGACTAATTCTAAACTTTGGTATGTGTTGTAGAAGCAGGTAGTGCCTCGTTATACATAACTGAGTTTTGGGGAACAAGAACCCTGTTCTCTTTTATGAATCTCCACATGGGTTGTGGTGTTTTGACTGTGGTTGTAAAAGATTTTGTGTGCTTGCAAGGAGTAATTGCCTTGTTTGGCAATGGGAAGGTACTTAATCACAGAGTGTAGTATGTGAAATGTACTCTTCCGTGCCTCTCCAAGAGTAGGAAAAACCCTGAGAGCTGTGGTATTGACAGCTTTCTGAAGTGTAGTTGTTGCATAACAGAGGAGATGATAATAGGAAACTGCTGTCTTCTGTAGTGTCTTTGTGGTTTTTGGAAAGGTAGTATCAGTACCTGTTTTACTAGTTTGCAAATCATTTATGATGAAATATTTGTGCAATTTCAATGCTTTGAACTTCATCTTGCATAAGTATATTCAGAGAGAAATAAGTGCTACTCTGAATAGTCAGTTTTCTGTCTTTATTGAAGCTGTTTTCTGCCTTACAGAGGGCACAGATTATGTAAGTGCTTTCCTTTTGTAGGATGGATAGGTTCACAATATGTGATGAATTTATGGAACAGTGAGCAATTTTTCTGATTATGCAAAGTTTAGAATTACTTACTTAAATCCTTATTTTATTTAG
Seq C2 exon
CATGATTCTCTCAGAATTGGAAACTCATGAGGATGCTTGGCCTTTCTTACTTCCTGTAAACTTGAAACTTGTTCCTGGTTATAAGAAAGTTATTAAAAAGCCTATGGACTTTTCCACAATTAGAGACAAGCTAACTAGTGGACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012579:ENSGALT00000037699:33
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.632 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0043920=Bromodomain=PU(1.2=1.1)
A:
NA
C2:
PF0043920=Bromodomain=FE(57.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGAGAGGCAGGAAATTACCAGG
R:
TGTCCACTAGTTAGCTTGTCTCT
Band lengths:
342-1030
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]