RnoINT0024840 @ rn6
Intron Retention
Gene
ENSRNOG00000056984 | Baz2b
Description
bromodomain adjacent to zinc finger domain, 2B [Source:RGD Symbol;Acc:1309801]
Coordinates
chr3:45970867-45971372:-
Coord C1 exon
chr3:45971107-45971372
Coord A exon
chr3:45971011-45971106
Coord C2 exon
chr3:45970867-45971010
Length
96 bp
Sequences
Splice sites
5' ss Seq
CAGGTATCT
5' ss Score
7.33
3' ss Seq
TCCAACATTGTGTTCTTCAGCAT
3' ss Score
6.49
Exon sequences
Seq C1 exon
GCAAGCGGTCAGAGTATAAAAATTAAAAAAATTCATATCAAAGGAAAAAAGACAAATGAATCCAAGAAAAGCAAGAAAGGAAACGTCGCTGGGGACACTGAAGACGAAGACTCCACTTCCACAAGCAGTTCACTCAAACGAGGAAGCAAAGATCTCAAAAAGAGGAAAATGGAGGAAAACACTTCCCTCCACTTGTCAAAAGCAGAAAGTGCTACTTCCGTTAAGAAACCGAAAAAAGAAGAGTGCAAGGACCTGGCTCTCTGCAG
Seq A exon
GTATCTTCCTTCCTTTCCTCTTCATTGTTGTGGCCCTCCATTTCGTTTGGGCCGATCCGAGGCCTAGGTACCGATTTCCAACATTGTGTTCTTCAG
Seq C2 exon
CATGATCCTGACTGAAATGGAAACGCATGAGGACGCCTGGCCCTTTCTGCTTCCGGTCAACCTGAAGCTCGTACCCGGCTACAGGAAGGTTATTAAGAAGCCTATGGATTTTTCTACAATTAGAGAAAAACTAAATAATGGACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000056984:ENSRNOT00000081302:32
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.629 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0043920=Bromodomain=PU(1.2=1.1)
A:
NA
C2:
PF0043920=Bromodomain=FE(57.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCCTCCACTTGTCAAAAGCA
R:
ATAACCTTCCTGTAGCCGGGT
Band lengths:
176-272
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]