HsaINT0016846 @ hg19
Intron Retention
Gene
ENSG00000123636 | BAZ2B
Description
bromodomain adjacent to zinc finger domain, 2B [Source:HGNC Symbol;Acc:963]
Coordinates
chr2:160181322-160182429:-
Coord C1 exon
chr2:160182164-160182429
Coord A exon
chr2:160181466-160182163
Coord C2 exon
chr2:160181322-160181465
Length
698 bp
Sequences
Splice sites
5' ss Seq
CAGGTATTA
5' ss Score
7.26
3' ss Seq
TCAAACATTATTTTCTTTAGTAT
3' ss Score
4.82
Exon sequences
Seq C1 exon
GCAAGTGGTCAAACTCTAAAAATCAAAAAACTTCATGTCAAAGGAAAAAAGACTAATGAGTCAAAGAAAGGCAAGAAGGTAACTTTAACAGGAGATACTGAAGATGAAGACTCTGCATCTACAAGTAGTTCACTAAAAAGAGGAAACAAAGACCTCAAGAAAAGAAAAATGGAGGAAAACACTTCTATTAACTTGTCAAAACAAGAAAGTTTTACTTCAGTTAAGAAACCTAAAAGAGATGACTCCAAGGACCTAGCTCTTTGCAG
Seq A exon
GTATTATTTCCGTTTTCATGCACTGTATATTTATAATGCCCCATTTTATTTGTTTAGAAACCTTTTACCATATTAAAGCTTTCTTTCTGATAATTTATGTAAATAAAAAAATGTAAAGCATAAATGTTAAGAAAATATATAAGTAAAAGTATAGTAAATGTATTCCTTTATCTTCTTTTAATGTTAATTTGCATTGAGTTTTTATTTGAAAGATTATAATTGGGCCTGGCACAGCGGCTCACACCTGAAATCCCAGCACTTTGAGAGGTCAAGACAGGTGGGTCACCTGAGGTCAGGAGTTCAAGACCAGCCTGGCCAACATGGTGAAACCCTGTCTCTACTAAAAATACAAAAATTAGCTGGGTATAGTGGCGTGCACCCATAATCCCAGCTACTCGAGGGGCTGAGGCAGGAGAATCACTTGAACCCGGGAGGCAGGGGTTGTAGTGAGCCGAGATGGTGCCACTGTGCTCCAGTCTGGGCGATAGAGCAAGACCCTATCTCATATATATATATATATATATATATATATATAAAATATATATATATATATATATATAATATATATATATATAATATATATATATATATAATATATATATATATATAATATATATATAATAACTGAAAGCTTTTTTAATTAAAAAATAAGACAGTTGTAAAGTATGGATACTGATTTCAAACATTATTTTCTTTAG
Seq C2 exon
TATGATTCTGACTGAAATGGAAACTCATGAGGATGCATGGCCTTTTCTACTTCCTGTAAACTTGAAACTTGTTCCTGGTTATAAGAAAGTTATTAAGAAGCCTATGGATTTTTCCACAATTAGAGAGAAACTAAGTAGTGGACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000123636-BAZ2B:NM_013450:35
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.551 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0043920=Bromodomain=PU(1.2=1.1)
A:
NA
C2:
PF0043920=Bromodomain=FE(57.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAAGTGGTCAAACTCTAAAAATCA
R:
CCAGGAACAAGTTTCAAGTTTACAGG
Band lengths:
344-1042
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)