MmuINT0024164 @ mm9
Intron Retention
Gene
ENSMUSG00000026987 | Baz2b
Description
bromodomain adjacent to zinc finger domain, 2B [Source:MGI Symbol;Acc:MGI:2442782]
Coordinates
chr2:59739532-59740048:-
Coord C1 exon
chr2:59739783-59740048
Coord A exon
chr2:59739676-59739782
Coord C2 exon
chr2:59739532-59739675
Length
107 bp
Sequences
Splice sites
5' ss Seq
CAGGTATCT
5' ss Score
7.33
3' ss Seq
TCCAACATTATGTTCTTCAGTAT
3' ss Score
4.21
Exon sequences
Seq C1 exon
GCAAGCGGCCAGAGTATAAAAATTAAAAAAATTCATGTCAAAGGAAAAAAGACAAATGATTCCAAGAAAACCAAGAAAGGAAACGTCGCCGGGGACACAGAGGATGAAGACTCGGCTTCCACAAGCAGCTCCCTCAAGAGAGGAAGCAAAGAGCTCAAAAAGAGGAAAATGGAGGAAACCACTTCCCTCAACCTGTCAAAAGCAGAAAGCACCACCTCCATTAAGAAACCCAAAAAAGATGAGTCCAGGGACCTGGCTCTCTGCAG
Seq A exon
GTATCTTTCTCTCTCTCTTTTTTCTTCTTCTCTTCAGTTGTTGTGGCTGTTCTTCCTTTGGGCCGTTCCAAGGTCTAGGTACCGATTTCCAACATTATGTTCTTCAG
Seq C2 exon
TATGATCCTGACTGAAATGGAGACACATGAGGACTCCTGGCCTTTCCTGCTTCCTGTGAACTTGAAACTCGTACCCGGCTATAAGAAGGTTATCAAGAAACCTATGGATTTTTCTACAATTAGAGAAAAACTAAATAATGGACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026987-Baz2b:NM_001001182:34
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.674 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0043920=Bromodomain=PU(1.2=1.1)
A:
NA
C2:
PF0043920=Bromodomain=FE(57.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGATGAAGACTCGGCTTCCA
R:
GCCGGGTACGAGTTTCAAGTT
Band lengths:
245-352
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: