DreINT0001864 @ danRer10
Intron Retention
Gene
ENSDARG00000082979 | BAZ2B (2 of 2)
Description
bromodomain adjacent to zinc finger domain, 2B [Source:HGNC Symbol;Acc:HGNC:963]
Coordinates
chr9:52415787-52416720:+
Coord C1 exon
chr9:52415787-52416013
Coord A exon
chr9:52416014-52416576
Coord C2 exon
chr9:52416577-52416720
Length
563 bp
Sequences
Splice sites
5' ss Seq
CAGGTGCTC
5' ss Score
3.6
3' ss Seq
TTTTTGATTACTCTGTTCAGAAT
3' ss Score
5.4
Exon sequences
Seq C1 exon
GCGAGCTGTGAATCCCTGAAGACCAAGAAACCCTTGAACCGTTCAGGACTGAAGAAACGACAGAGAAAAGCATCTGCAGCCGGAGACTCAGAGGACGATTCAGCCAACAGCACTTCCAGAAGACAAGCGAAAGAGATCAAAAAGAGGAAAACAGAGGAAAGTCCTTTCACAGCCCCAGTGAAGCAGGAGAAACACAGAGACGACAGTAAAGACCTGGCCTTGTGCAG
Seq A exon
GTGCTCGATTATTCAGATTTCATAATATATTATTTATAGATAGTCTAGTGTGAGTGGACAATGGATTATAAATGTGGAGTTTTAGATGAAGCACAAGTGAACAGCGACAGAAGTGTCCATAGACTGACACATTCACACACACTGACACACACATTTTCTGTTTCACACTGATAACGTTAGTCCTGTTTTGATCCTGTCACTATGCTGACACACAGGCATGTGTAGCTCCGCCCTCTTTTGAAACAAGAACAATCTCATTTGAATTTAAAGTGACAGTCACCAAAATGGCACAATTTGTATCAAAGCCTAAAAGGGGCGGATTCAGAGAGTTATAAAGCATTATTTGTGTGGTGTTTTCAGCCTGTGTGTATTTTCAGTTGGTGTTTTGTTGTTCTGGCAAAAAAATAAAGCCCAAAACTGCTGATGTTTCAATAAAATAACCAACAGAAGAAAGTTAAACCAGTTTTGAACAAGTAAAGGGTTAATAAATAATGAGTTTTTAGTGAACTATCCCTTTAAGATGTTGTGTGAGGATGTTTTGTGTTTTTGATTACTCTGTTCAG
Seq C2 exon
AATATTGTTGGCTGAGCTGGAGGGTCATCAGGAAGCAGGGCCGTTTCTGACACCCGTAAACCCTAAATCTGTCCCGGGATACCGCAAGATCATCAAGAAACCCATGGACTTCTCAACTATCAGAGACAAACTCGCCAGCAGCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000082979:ENSDART00000097149:41
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.671 A=NA C2=0.224
Domain overlap (PFAM):
C1:
PF0043920=Bromodomain=PU(1.2=1.3)
A:
NA
C2:
PF0043920=Bromodomain=FE(57.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCCTGAAGACCAAGAAACCCT
R:
GCTGGCGAGTTTGTCTCTGAT
Band lengths:
354-917
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]