BtaINT0026750 @ bosTau6
Intron Retention
Gene
ENSBTAG00000002495 | BRD4
Description
bromodomain containing 4 [Source:HGNC Symbol;Acc:HGNC:13575]
Coordinates
chr7:8883051-8889002:+
Coord C1 exon
chr7:8883051-8883179
Coord A exon
chr7:8883180-8888792
Coord C2 exon
chr7:8888793-8889002
Length
5613 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
CCTCCCTCCCCCACCTCCAGGAT
3' ss Score
11.45
Exon sequences
Seq C1 exon
TCTAAACTGGAGGCCCGTGAGTACCGTGATGCTCAGGAATTTGGTGCCGATGTCCGATTGATGTTCTCTAACTGCTACAAGTATAACCCTCCTGACCATGAGGTGGTGGCCATGGCCCGCAAGCTCCAG
Seq A exon
GTGAGGCTCTGGGGCAGCTCCGGGTGTGGCGTCCTGCAGCAGAGCAGGCTGGGGTCCTGGGTGGGCCAGGCCTCTGTGGGCCTCAGCAGGTTTTACTTTTGTCGCTTGCTTTGGTATAATGCCATGTTGCTTTGGAAGAGTGGACTAAAGTCAGAATAATACATATATTTTACATTGGGATTATTTCCTTTTGATTAAGGTAGGGTGGTTGGTTTTGGTCTTGGGCATTTTGGGTTTTGGGGTGTTCCACTGAAAGCCCCCCCAACCCCCCACCCCCACCCCCCTGCATTCGATTCCCCTTGGCCGGAAGAGTGCGCATCCTGTGCATGGCCCAACTCTTCTCCAAAACAGACCTGTCTCAAGTCGGCGAGGGACACTCTTGCCAGGTAGACACTTTGTCCCAGCTGTGAGCTGAAGTAGCTGCTCATTTGCGGGCATTCACTGGAGCCTTGAGAGCCATGATGCGTGCCTTCCCGCTGCAGCGCGGCTGCCTCTAGACGTTCTGTGTGGCTACGGAGCCCTAGTGGGGTGGGATTCTGGCCCCTTCAGGTTGATTCTAGGTGGTGTGTGCTGTGGAGTGCACACGTGGGTGGGGGCGAGGGGGCAGATTACAAAAGAAACGCGTGAACTAGCTCCACTTTTCTTTTTTTGTTTTTTTGTTTTTAAAAAGAAACAAGGAACAACTATGCCCAAATTTCAGCAGAGACATGTCTTTTGAGTAAAAAGATCAGGAGTTAAAAATTATGGAGAATAAAGTCAACATTTAGTACTGTTACCTGTTTTCATTATTATAATTTTTTGAAATCACATATAATGAAAATTCCCAGCCTCTTCTCCCCAAGACCCCAGGTTGCACTTCTGCTTTCAGGGTCAGAGCAGCCTGGACCACCCGTTGTCACACGGTCCAAGTCACACATCCTGCGACAGGCTCTCCTGGGGTCCTGGTGGGGCTTCCTCACCCCAGGCTTTTCTCTGTCAGCTGTGGAATGCTTCCAGAAGCGAGGACTTGCACAGGGCCTTTGATGGCCTTGAGTCGGTGTCTGTCGGAGACCACTCCGGCTCTGCTGTCCACCTGTCTCCTGGCTCCGCTAGCTTCACACACTGTCCCACACTCACCAGCATGTTGTCTCCTGTGTCATCGTCTTGGAGCCAAGATGTTCTTTCACTTGGGCTTGTCTGGGTCAGCCTTTGGTGTCCTGAAACTCTAGGTATTTAAAAAGAAAAGAACACCTGACTGGTATGAACCTGGTTATTGTTAATTAAACATGCACTCAGACTTGAAGGTTCTGATTTCTGCTGACTGTGTACTACTTTATTTGAGGTTTTCTGTTTTTGGAAGGGGCACTCTCTTCAGTTTGGTGCTGTGTTGTCTGCTTTCCTCACAAGGTTGCCTTTTCTACTATTTACTTTTAACATTTGCCATCCTAGCTGCTCAGGCGTCATACCTGTACTGCAGTTCTCAGACATCACCACCAGGTGGCAGTGGTTCCCTCAGAGCCACACACACACAGCATTTTTCTTGTTCTGGAGGTGCCATGAGCATGCCCAAACATGGGATCTACTCATAGCACGGACACCGAGGTGTTTGCCACATGGCAGCTCTTTTCTAAATGTTGGTTCCAGATACAAGGCTGGAATGGGACAAGGTCCTTGCCCTCGAGGAGGGTCCACTTAGGTGGGAGGCAGAGGGCAGTGCCCAGTGGGCGACTCAGTGCAGGGCTGCCTCTGCCCCCAGCTTGCTTTGCCCTTCACAGGGTGGGTCTCCATGCTACTGAAAGTAAAACGCCTGGAAGCAGGTTGGGGTGTCTGCTTCGGCAGAGTTGACGTGGCAGGTCCCTTGTGGGCATTTCTAGAACGCACTTCCTATATTTTGTAGCATTTAGAGGTTTGTTTTTCTTCTTTCTTTCAAAGTTCTCCAGGATCAGCATGGTTTAGGGGGCTAGATTGCCTACTGGGGAAGAGGAGCAAAAAAATTCTGGCCCTTGTGTGTGTCAGTAAGAAGAGTTGAGACCTGCTGTGCCCAGGGGCTGAGGTTGACCCAGAAAGTTTTACTGGAAAGGATCCACTTTATGTTTTTTGTCCAGCCTCCAAATGCTGGATCTTTAGAAAGCCCACATCCCACCTCCTGGCAGCTATGGTCACAAAGATAGCTAGGAACCCTTGGGTTCACAGTGTCCTTGGGAACCTGCAGTTGACTTGAGCTGAGGGTTGCTAGCCTAGCTTCTGGGCCCAGAGCTGCTGCTGGTACTGTTCATTGCTCTCTGTTCTGCTGTGAAGGGAGGGGTAATTTAGGAAGTTTTGTGCTTACGTGGATTACCAGAGTTTTATTTTAGCAGAAAGTGCAAATTCATGGTGGTACACAGTTGTTTTACAGCAAGGGAAAAACATTAAACTGAGGAAGGTACATACATAGCCAAGGCCCCAATGTACCTCCAGTGTATGTATGGTTGTGTGTGTGCGTGTGTGTGTCTTGAGTGTCCCCTCATGGCTGCGTCTCCAGCACCTGGGGCCAAGTGGGCCTCCATGGCCTGAATTCTACTTCTCACTTGCATGTCCCCAGCCCCTGAGCCTGGTATGCCCAGGTATGGCTAAGCCCGAAAGCAGTATCCAGGTGGGGCAAAGACGGGCTGACTGGACAGCACCTCCCCTTTGGTCTCCAGCTGTGCTCAGCTGAAGGCTGGTTTGCCGGGAGTCTTTGGACACCACCGCCTCCCAGCACCTGAGCATCTCTGTCACTAAAGAGGGTAGGGAGCTTCCTCCATGAGTCTGATACAGTCCAGAGTAGATGGCCCTGGTCAACACTATAGTGAGAAGAGATGCTTGCTCTCGGAAGCCAGGGTTCTCTCTGATGTTGAGAATTGCGATGTGGCCCAGGTCCTTGGAGTGGGGTGGAGGTCATGTCATACTAGGCAGAGTAGATGGGTACACCTCAAGACACTAGCGTCCTAGCACAGAAGGCCTGAGCCCTGCTCCCCTGGTGTGTGCTGCTGATCACTGCTCCTTCCTGTCACTCCCCCCTTCTGAGACACTTGCCCTGGGTGCAGCTCATTGGGTTTTACTGTCTCTTGCCTGACCCCACGCCACTTGGACCTTTCTCTCATTTGTACCATCCTGTGTGTCTGCAGCCTTTGTTACCCTCTTCTCATTCTTAGGTCTCAGGTTCCTCCACAGGCTCTTGGCCAACTCTTGCTGTTTCTGCCTTAGCGCTTAGGACACATTATAACAATCTGTGTTTGCCCCTTGAGGACAAGGAGCACATCTGTCTTGTTTACCACAGAGCAGGTGCATGTTCGGAGAAGGCAATGTCACCCTACTCCAGTACTCTTGCCTGGAAAATCCATGGACAGAGGAGCCTGGTAGGCTGCAGTCCATGGGGTCGCTAAGAGTCGGGAACGACTGAGCGACTTCACTTTCACTTTTTACTTTCATGCATTGGAGAAGGAAATGGCACCCCACTCCAGTGTTCTTGCTTGGAGAATCCCAGGGATGGGGAAGCCTGGTGGGCTGCCGTCTATGGGGTCGCACAGAGTCGGACACGAGTGAAGCGACTTAGCAGCAGCAGCAGCAGCAGGTGCATGTTTGTCTGGGTCACTTGGGAAGGTTTTCTGCAGCAGCCCTTAGCTCACTGGCACACAGGCCCAAGTGTGTTCCCGGGGTGTCCCCCCTAGGGCTGGAGCAGACACGGGGATGATGGATCGTTCAGCTGGGCACAGCCCAGGAGGCTGGCGGCCCATTTGGCCTTCTGTTCCATGCTCCTTGCTGTTTGGTTTTGGGGCCTTGGTAGGTCAAGGGCCAGAAGCAGCCAGGGAGTGGAAGGGGGCTTCATTTCCACAGCAGCTGTAACCTGTGGGGCAAGAACAGGGGTGCCCTTGTGGTAAGGTAGAGCTCTCTGACGGCTGGCATGGGGGCTGGTTCACAAACTAGTGACACACGTAGCTTCTACTTGGTAAAGGATCACCTCCCAGCAGCACCAGGTGCTTGCAACTGTCCTGTCTTGGGGTCCAGCTGCTCCACCGCCTTCTTAAACACACTTCTCCAAGTGTGGGCCCGGTTCTTCTAGATGCTTGTGGGGGGCAGTCGTGGGCCCCTGCCCACATTCAGGGCCCTGTGGGCAGAGATGGGCTTGCCCACAGGTCTTGCACCTGGCAATCTGAACAATGATAGTGTCTGGTCATCTCTCCTGTTTTTCTTCTTCATTGCCCTTGGATATGCTCCAGGATTTATTTCTGAATAAATACAGAAAGATATTGCCCTTCTTAACCTCAAACCCACTCAGCAGAGTTCAGGCAGGCACCTTGTTTGAGAGGAGAAACTGCCTTGGAGGAGGTCAAACTGAGTAATCTGGAGCAGAGGGAACAGTCCCACAGTCTGCTGCCCAGATCATGCTTCCCCAGCTCTCTGGATGGGGAAACCTGAAGATGTGTCTCTAGAGCATCGAGAGAGTCTCCTAGGTTGCGCCCTGTCAAACACACCCCAGTTTGAAATAGCAGCCTTGGAGTTTGACCCTGTGGCCCTTCTGGGCCCTGCTGTTCTCTCAAGTATCAGGTCGCGCTTGAGAAAGGTCCCCCTGCTTCTGTTGTGTGAGTTGCTGTATTAAACTGGGCTTAAAACAGGTCTCAACATCCTGCTAGGGAAACAGCTCTGTTCCTTCCACCACTATCAGTTCTGAGTCGTCATTGGATTTCTGGTGACAAAGTCCCTTGGGTAGAGAGGGAATGGCCAGCTGGCAGGCGAGGCAACACACAGTTGAACCCCTGGAGCCCAGGAAGGATTGCTGCCCCGCTGGGTTCTGTGACCCATGCAATTCCATCAGATTTCTGAATCTCAGAGTTGAAAGGTCTTGGGATCTCCTGGGGTAGGATCTGGTGCTCAGTCCACCCAGGGTCTCTGCTCAGGTAGCTTTCGCCTCACAAAGCCAGTCCTCTCCCATAGCCGGTCTGCAGTGCTCCACACCTTTTCTGTACTTTTCTCGTATTTCTATTGTGTCCTGGAGATGCCATCGCCAGTGAGGACCCGATCACTGCAGGCTGTGGGCTCTATGTGGGGCACACTCCCACCTTGGGGCCTTCACTCCCTCTGGAACTCTAAACCTGCAGGCCGTGTCTGCTGCCTGTGGGGATGTGACCCGTGAGAGAGCCTCCTGTTCTGTTCAGTATTGTGTCCTGCTGCCCAGCCCAGCATCTGGCAGGCTCCCCTGGGGGGTCCTCACTGAGCACCAAGCTGTCAGGAGCCTCAGAGCACTTTCTCTGTGAGTCTGTCCAGGTCTGCAGCTGTCAGGGGTGCCCAGCCTGATGTCCTCATTGGGCCAGCCATCTACTGTGAGGTGGGTCCTTAGGCCACATCTCTCAGGGAGTGGGCATCAGGCCATGTTGGGAGTGCCTTTCACCTCCAAGTGAGATTTGAGAGAGGAGTTTTGGAAGAACTACTGGGAGCCCTTGCACACGCTTCAGCTTAGTGGCAAGAAGGGGGTCACCGCTGACCCAGCCCTCTGCTTCCTGTCGAGTCAGCTCTCCCAGCCAGGAATGGCTTGGTGTGGGGCCACAGTCCAGGTGCCCGCCCCGGGCACCTAGCAGCCCTCATGGGCACGGCTTCCCCTCCCTCCCCCACCTCCAG
Seq C2 exon
GATGTGTTCGAGATGCGCTTTGCCAAGATGCCAGATGAGCCCGAGGAGCCTGCAGTGGCCGTGTCCTCCCCAGTGGTGCCGCCTCCCACCAAGGTTGCTGCCCCGCCCTCCTCCAGTGACAGCAGCAGCGACAGCTCCTCAGACAGTGACAGCTCCACTGACGACTCCGAGGAGGAGCGAGCCCAGCGGCTGGCCGAGCTCCAGGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002495:ENSBTAT00000003242:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.163 A=NA C2=0.943
Domain overlap (PFAM):
C1:
PF0043920=Bromodomain=PD(44.9=93.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]