MmuINT0025692 @ mm9
Intron Retention
Gene
ENSMUSG00000024002 | Brd4
Description
bromodomain containing 4 [Source:MGI Symbol;Acc:MGI:1888520]
Coordinates
chr17:32351576-32357234:-
Coord C1 exon
chr17:32357106-32357234
Coord A exon
chr17:32351786-32357105
Coord C2 exon
chr17:32351576-32351785
Length
5320 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
GCGTGGCTTTCTCTCCCCAGGAT
3' ss Score
11.18
Exon sequences
Seq C1 exon
TCTAAACTAGAGTCCCGAGAGTACAGAGATGCCCAGGAATTTGGTGCTGATGTCCGATTGATGTTCTCCAACTGCTACAAGTACAACCCCCCTGACCATGAAGTGGTAGCCATGGCTCGAAAACTCCAG
Seq A exon
GTAAGGCTCCAAGGTCAGGCCAGATCTTGCCTTGTCAGGTATTTATTCTGTCACTTCACTCATAATAATGCAGTGAGGCTTGGAGGAAATTTTGTTTTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTTTGAACAGGGTCTCTCTTATGTAGGCCTGGCTGTTCTGGAACTCTTAACATAGATCAGGCTGAGCATATGTAACTTACCTAATGCATACATACATTTTAAGTTAGGGTCATTAACTTAAATGTGAGTGGCTGGTTCTGTCTGTCTGCCTGTTCGTATCCCCCAACCCCTACTCCCCACCCTGCCCCTTCAACAACCTGGAGGAGACTTTTATTTTTTTTAAGACTTATTTATTACTTATTTTATATGTAAGTACACTCTAGCTGTCTTTAGACACACCAGAAGAAGGTGCCAGATCTCATTAGAGATGGTTGTGAGCTACCACGTAGTTACTGGGATTTGAACTCAAGTCGGTGCTCTTACTTCCTGAGCCATCTTACCAGCCTAGCTTTTATTTTAAAGAAAAGTACATACCAAAATTTACAGAGACCTATAAGGTACAAGTGCTCTTAACCATTGAGCCATCTCTATAATGCCCAGACCTGCCTTTAAAGGAAACATAAGATCTTAATTCCCAGCCATTTCTTCATTAGTTCATAGGTTGCTACCGCTCTCAGGTCAGTGGTCTGCTGAGCAACCTGCTACTAAGAAGCACAGGTATATTAGTTGTGGGTCGCAAGGCTTCCTTGGGTCTGCTTATATAGCAGTCTCTAGGGTTTCCAGGGCAGAGATTTGCAGAGCTGTTGGTGACCCGTTGGTCTTTGTCATTAGAACTTTGGTGATTCCCTGCCTCCATACTATTTTGTTAGTTTTGCTAATGTGTCACATGATAGCATCTTTTCTCCTTCAGTTCAGAGAACATGTCAGATTCAAGGGTAGCTTGATAGGATTGACTACTGCTCTTTGATAGTGTTGACCTGGCTCTTAAAATTCAAATGCACGATCAGACTATTGGGAATTTTTCACTTGATTGGTTGATTTTGTTTGTTTTACATTTATTTGTATGGGTGGTTTGACTGAGATGTCTGGTGGTTATGGAGTCTTAAAAGATGGTAGCAGATCCTCTAGACTGGAGTTGTAAGCTTCCAGCTTCCTTAATGGTGCTCGGGACAGAACCTGAATCTCCTGCAAGACCATCTAGTACCATTGGTTTGGTTTGGTTGGTTTGGTTTGGTTTTTGTGTGTGATTGTTGGTTTTTGTGTTTTTGTTTTTTTTTTTCTTTTGGTTTTTTGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTCTGTAGACAAGGCTGGCCTCGAACTCAGAAATCCGCCTGCCTCTACCTCCCAAGTGTTGGGATTAAAGGCATGCACCATCACGCCCGGGGTGGTTTTTTTGTTTGTTTGTTTGTTAGTTTTTGTGTTTTTAAATCTTCCTTAGTTTTGTTTTTTTTTTTCTGACTTGTACTTGTCACTTAGCATTCCCTCTTCAGTTTGGTGTTATCTGTCCTTCAGCTTCATAAGAAAGGCAGCCCCTTCGCCATTTATGTTTGCTTTCACTAGTCTTTATGTGGAATTAAGGCTTTTAAATTTTGCTACAATTTTTTAAGATACATTTTATTTATTAGTTAATGTATTTGAACTATACTCTTGTTGTCTATCTCTGGCTAGTTCTACCTCTACATTCTGAATACTGGAATTAAAGATAGTCTACATCATACTCAGCTGACTGCACTTTTTAAACAGGACCATCAAGTGGCAGCGTGCCTTCAGACTTTGGTCTGAGGACCCCCTCCTTTTGCTCACAGTTTTTTAGAACCTAGGGTAGTGTTTGGCCATTTTTGTCCCTGGTTTAGAAACTGTAAAGTTCAATTCAGTTTCCTGCCAGCAAGGAAAAATACTATCTTGAGGAATTAATATTAAAGAAGGGAAAGAAAAACCACTGTGTCTGGTGCGCCCCCCCCCCCCCCCCCCCATGCCTTGCCACTACTTCTTCCTCTGTACAGTCTGGACTCTGAAGGGGAAGGGTTTGCTTTTATATTTTGGTGTCTTGTTTAAAAGTTTTCTTTTGTATACCTTTCTCCTCTTAGTGGGTGAATCTGTTCAAGCATACCATTTTTATTAGGATGATCACCAAGCTATCTGCTGCTTAGCAGCCTACAGAGATGAGTTCTTCATAGGCATTGACTAACAAGCTTGACTTAGATGAGATGCCTGTTCTCAAGGAGAGTCCCTGTGAGGCAGGCAGGGGTGGAAGGTTCTTAGCATTATCTTTTGCCAGGCAGATCTCTATTCTGAAAGGCAGTTATCTTTGAAGCATCTTGGGGTTTTGTATTCTTTTTCTACAAATGTCCCCTATCAGAAATCTGTAAGAAGCCAGAAAGGGGAACACAAAGCTTTTACCTTGTTTACCTCTTTAAGAAGTATGGGGGAGGGGACACACTGAAGAAATGAGTAAATGGTTAAAAGTGCATTCTGTGCACCATGAGGTCTAGAATTTGGATCTCAGAACCTACCTCAAAGAAGGACACCGGATGCCCTCTTCAGGTCTCTATGCATACAGGTATGCAGACCTACTCTCTCTCCATAGGCATATTCTCACATAGATACATACACAAAATAAGTTTTTTTAAAAAGATTCATTTCAGGCCAGATAGTGGTGGCGCACGCCTTTTGATCCCAGCACTTGGGAGACAGAGGCTGGCGGATTTCTGAGTTCAAGGCCAGCCTGGTCTACAGAGTGAGTTTCAGGACAGCCAGGGCTATACAGAGAAACCTTGTCTCCAAAAAAGAAAACAAAATTCATTCCTTTGTTTGTTTGTTTGTTTGTTTATTATATGTATAATGTCCTGCCTGCATGTATGCCTGCCTGCAGGTTAGAAGAGGACACCACATCTCAGTAATAGATGGGTATGAGCCACTGTGTGGTTGCTGGGAACTGAAATCAGGACCTGTTGACGAGAAGCCAGTGATCTCAACCTCTTGAGCTATCTCTCCAACCCTGAACACAATTTAAATTTAAACCAACTTAAGTTTCTTTTCTTTTTCTTTTTCTTTTTTTTTTACATTTTTCGAGACAGGGTTTCTCTGTGTAGTCCTGGCTGTCCTGGAACTCACTCTGTAAACCACGCTGGCCTCGAACTCAGAAATCTGCCTCTCAAGTGCTGGGCGTGCGCCACCACACCCTGCCCAACTTAGGTTTCTTAATTAGGCTATGTTGCAGGAATAGAATTTACTTGGAAAAGTTATATAGAAAAGGAAAACTTCCTTTCCACCTTCATTCTAGAAGATTTGTAGTAACTGCAGCCCATGTGCTTACAGGACTTTAATTTGTTGAGGAGGTGGGCACAAGTTCCTTGTGGTTGTAATTGTTTAATAGGGAAAAAGAAACTGGAAAGACATTTGGCGCCTATTTTAGGTCCCAGAGGTAGGCAGGTTTTACTATGGGCCTTGGTTTGTTCAAGCTTCCTCCCAAGCACGTGGCACCGCCTACTGAACTTTCAATTTTTGTATCCCAAAATTTTAAATGGGTTTCTACTTCCAACTTTGGCTTCTGGACTGTTTCATCTGAGATAACTTAGACACTGTGACCCCCCCAGCACCTGAATTTGTATTGAAAGGGCTTTTACCTACCTACCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCCATTTTGGTTTTTCAAGACAGGGTTTCTCTGTGTAGCCCTGGCAGTCCTGGAACTTACTTTGTAGACCAGGCTGGCTTCAAACTCAGAAATCCACCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCGTGTGTCACCACACCCGACCTTATGATTTCTTTATCACATACAGCCTGCTTAGTATTCTAATACACACACACACACACACACACAGAGTTTACCTACATGAGCTGACCTAGGCCCTCTGCATATATGTTCGGTGACACCATCAATGTTGGATCCTCATTGGAACTCCTGGTTATTCTCTCGTTGCCCGTGTCATGGAGATCCTGCAGCTTTGGATCAGCAGGACTGGCCCAAGTGTTTGCAAATTATACTAAGTTTGGGATGAGCATACTCAGTGCCCTGGATCTGGGCATGGGAGGTAGCTGAGCTGGTCAGCACACTGGCTATCCCTTATTTGCACCACCAGGGTGAGTTCTCTAGCACTTCTCCAGGTAGGCCTCCCAAAATGACTCCATCAGCAGGAAAGTCAGGGTCAGCTTTCATGCCCTCAGGTGCTTTCTTGCACCCAATATCTCCAGAGCCAGCTCCAATCTGCTGCCCAGTCAAGGCTACTCCTAACTGCTGCAAGTACACTGTAGCTATCTTCAGACACTCCAGAAGAGGGCGCCAGATCTTGTTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTTCAGACCTTCGGAAGAGCAGTCGGGTGCTCTTACCCACTGAGCCATCTCACCAGCCCGGTTATTCCATTCTTAAAGCAGGTCTTTAAAAAAAATCTTTCTGGGAAGCCAACCTTATTCCTTATATGTCTATTCTGTGAGTTGTTGTTGGATTGACTGTGGCCTCCCCAACATAGGCGGGAGGAGTACAGATTGCCAGTTGGTTGCCTGTGTGTGATTTGATTCCTAGGAGCACAGGCAGGGACTACTGCTCTATGAGTTCTGTAACTCCATGTAACTGTCAGCTGGTCTCAGAGTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTCCTCTGCCCAGAATCCCAGTGGCTTCTGTGGCTTCTGCTCTGGTTGGTTATACTTCACAAGGTACCCCTTATTGCCATAAGCACTGTACACCGCTAGCCAGCATTCCTAGAGATGCATGATCCATAGGCTTATTCAGTTACATGGACTACTCCGAGTAATAGGAAGGCAGATGTAGACACATACACATGTGCATTCTACTGGGAATATTCAACTCAGCCTTTGCCAGCATTCTTTTCTCTATGTAGGAGGCCAGCAAAAACCTCATGTCAGAGAGCTCCAGACCTGTAAGGAGGTTTGGGCATCTTCTCTGGGGGTCTTGCTCATGGCCTAACACTTACTAAGAACCCTCAAACTAAAGTTCTCAGAAGACTAGTTTTTTTTTTGTTTGTTTGTTTTTTGTTTTTTTTTAACTTTGGTCACTGTTTCCTCCAAGGAACAAATCTGGTCCCAGGCATTCCGAGGGCTGAACACCCACATAAGCGTGGCTTTCTCTCCCCAG
Seq C2 exon
GATGTGTTTGAAATGCGCTTTGCCAAGATGCCTGATGAGCCTGAAGAGCCAGTTGTTACAGTGTCCTCTCCTGCAGTGCCACCCCCTACAAAGGTGGTAGCCCCACCCTCATCTAGTGACAGCAGCAGCGACAGTTCTTCCGACAGCGACAGTTCCACTGACGACTCTGAGGAAGAGCGAGCCCAGCGGCTGGCTGAACTCCAGGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024002-Brd4:NM_198094:8
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.256 A=NA C2=0.925
Domain overlap (PFAM):
C1:
PF0043920=Bromodomain=PD(44.9=93.0)
A:
NA
C2:
PF0093713=Corona_nucleoca=PU(62.6=95.7),PF139251=Katanin_con80=PU(55.6=42.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: