RnoINT0026419 @ rn6
Intron Retention
Gene
ENSRNOG00000006770 | Brd4
Description
bromodomain containing 4 [Source:RGD Symbol;Acc:1307282]
Coordinates
chr7:14242089-14246931:-
Coord C1 exon
chr7:14246803-14246931
Coord A exon
chr7:14242299-14246802
Coord C2 exon
chr7:14242089-14242298
Length
4504 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
GCATGGCTTTTTCTCCCCAGGAT
3' ss Score
9.19
Exon sequences
Seq C1 exon
TCTAAACTAGAGTCCCGGGAGTACAGAGATGCCCAGGAGTTTGGTGCTGATGTCCGATTGATGTTTTCCAACTGCTACAAGTACAATCCCCCTGACCATGAAGTGGTAGCCATGGCTCGAAAACTCCAG
Seq A exon
GTAAGAATCAAATTAACCAGGCCAGAATCAAACTAGTAGAGATTCCCCTACCCAGCTCCTCTGAGCATCATACGCAACTCACCTAATACATTAATACATACATTTTAAGTTAGGATCACCAACTTAAACGTGGTTGGGTCTGTTTCTCTCTTCCTCTCTCCTACCCTAGTAACCTGGAGGAGGCTTTTTTTTTTTTTTAAGATACTTTTTTTTTTTTTTTTTAAATGTATGTGAGTACACTGTCGCTGTCCTCAGACACACCAGAAGAGAGCATCAGATCCCATTACAGATGGCTGTGAGCCACCATGTGGTTGTCAGGAATTAAACTCAGGACCTCTGGAAGAGCAGTCAGTGCTCTTAACCACTGAGCCATCTCCATCCTATTGTCGTCGTCCTCCCCACCCCCACCCCCCTTATTACATAAGGTTTATTAATATGTTTAAAATTGGAGAATAAAGGCAATATTTATTACCTTATTATGACCCGCCTTTTACTTACTCTAATTTTATTTTTATTTAGATAACTTTCTGTGTATGCCATGTGTGTGGGTGCCCATAGAGGCCAGAAAAGGAAGGGTATTTGGATGTCCTGGGTTTGGTTGGAATTAAAGTGAGTTGTCAGTTGCCTGACAGGGTGTGGGGAACGGATCTGAGACCTGTAAGGTGCACAGTGCTCTTAACCATTGAGCCTCCCTATAACGCCCAGATCTGCCTTAAAGGAAAGACCTCAATTCCTAGCCATTTATTAGTTTCATGGTTGCTACTGCTCTTGGGTCAGTGGTCTGCTGAGCAACCTACTATTAGGAAGCATGGGTATGTATATGAGTTGTGGGTCTCAAGGATGGCTTGACAGGATTGACTGTCCTTTGTTGTTAGTGTTGACCTGGCTCTTAAAATTCAAATACATGATCACACTTGCTATTGTCTTTGGTTGGTTGGTTTTGTCTTTTACACTTATGCATGGGTGGTCCGACTGAGATATCTGATGGCTGTGGAAGCTGGAAGAGGGTAGCAGACCCTCCAGACTGGCTTTGTCAGCTTTCAGCCTCATGAAAGGCGCTTAGGGACCAACCCAGGATCCCCTGCAAGAACATCCAGTATTAGCCCTCCAGCACCTAGAAGGTTGGGTTCGGTTTGGCTTTTTTGTTTTGTTTTTTTGTGGTTGGATTTTGGTGTTTGTTTAAATCTTCCTTAGGTTTCTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTTTCCCAACTTGTACTGGACTCTAGGACTCCCTCTCTCTCCAGTTTGTGTTACCTGTCCTTCAGCTTCATAAAAAAGGCAGCCCCTTCACCATTTATGTTTGCTTTGACTAGTTTTTGTGTGGAATTTGGGCTTTTAAATTTTGCTACAGTTTTTAAAATATATTCTATTTATTAATGTATTTGAGCTATATTCTTGTTATCTATCGCTGCCTAGTCCTGCCTCTGCATTTGGAGTGCTGGAATTAAAGAGGCTACACAAACTCAGCTGACTGCAATTCTTAGACAGGTCCACCAAGTGGCAGTGCGCCTTCAGTCTTGGATCTCAAGACCTTTCTTCTTGCTCAGTTTCCTGAAGATCCAGGGTAGTATTTGCCCGTTTAATAGCTGCCCATTTTTGCCCGTTTCAGAAACTATAAAGTTCAATTCAGTTACTTGCCAGCAAGGAAAAATACTATCTTGAAGGATTATTTTTTTTTTTTTTTTTTTTTTGGTTCTTTTTTTCGGAGCTGGGGACCGAACCCAGGGCCTTGCGCTTCCTAGGTAAGCGCTCTACCACTGAGCTAAATCCCCAGCCCCTTGAAGGATTATTATTAAAGAAGGGAATGAAAAGCCACTGTTCCTAGCACAGCACTCCTCCCCCACCCCCGTCTGATTCCCCGTCCTCCTGATACCTTGCCACTACTCCCTCTTTACAGTCTGTCCTCCTTTGAGGGTTTGCTTTGGTTTTCCATTTTGGTGTCTTGTTTAGAAGTTTTCTTTTGTGTACCTTTCTCTTCTTGTGGACGAATCTGTCCAAGCCTGCCATTTTCATTGTTAGAATCACCAAGCCATCTGCCACTTAGCAACCTCCAGGGATGAGTTCTTCATGGGCATTGACTTCCTAACAAGCTTGGCTTAGATGAGATGCCTGTTCTCAAGGACAGTCCACTTGAGGCAGAGACTCTTTGTAGCATTATCTCTTGCCAGGCAGGTTTCTATTTTGGAAGGCAGTGTTTGTAGTATCTTTGGATTTTGTATTTTTTTTCTACAAATGTCCCCTGTCAAAATGCTATAAGTAGCTAGAAAGGGGGACACAAAGCTCTTACCGTCTTTACTCCTTTAAAAAGTGTAAAGGAGGCTGAAGAGGCGACTAAGTGTTTAAGAGTGTGTTCTAGGCATCATGAGGACTAGGATTTAGATCTCAGAACCGGCATAATAAGTCAGGCATCCTGCACATGCTTATAACCCCAATTTCCAGGGAGATGGAGAGAGTAGGATGGCTAGTCCTTGCTACCTTACTATCCAGCCAAGAAAAATGAGCTCTACATTCCAAAGAGACCTTTCTCAAAGAATCAGGTACATGGTAAAGGAGGACATCTGGTGCCCTGTTCAGGACTCTATGCACACAGGCATGCACACCTACTCTCTCCATAGGCAACACCCACACTGATCCATACATGCAAAAAAAAACCCCAAAAAACCAAGTTTCAGAAAAGATTCATTCCTTTATTTGTTTGTTTATTATGTATACAATGTCCTCCCTGCATGTATGCCTGCCTGCGGGTCAGAAGAGAAGCCAGTTCTCTCAACCTCTTGAGCCATCTCTCCAACCCTAAACACAATTTAAGAAAAAAAATTATTGAGGTGAACTTAGGTTTCTTAATTGGCTGTGCTGCAAGAATAGAATTGACTTGGGAAAGTTAGAAAAGGGTCTACTTCCTTCTCACCTTCCTTTCCGAAGGTTTGTAGTAACTTCAGCTCTTGGGCTTACAGGACTTTAATTTGTTGAGGGGTGGTCACAAATTCCTTGTGGTTGTAATTGTTTACATAGAAAGAAACTAGAAAGAAATTGGATCCTATATTAGGTACCAGAGGCAGGCAGGCTTCGCTATGCGTGTGTGCCTTGTTCAAGCTTCATCCCAAGCTTATGGCACCACCTACTGAACTTTCCATTTTTGTACCCCAAAATCTTCAATGGATTTTCAACCTTAGCTTCTGGAATGTTCATCTGAGATGGTTTATATAGACACTGGCCTCCTAGCATCTGAATTTGTACTGTAAAGACTTTTATGTTTTTTTCATATATCACATACACCCTGGGCCAGGTACCTGCTTAGTATTCTAATACACAAACCTAGTCATACATGCACACACATGGGACTGACCTAGACCCTCTGCATATATGTTCTGTGAACCAATATTGGATCCTCATTGGGACTCCTTTCGGTTATTGTGTTGTTGCCCTGTGTCATGGAGATCCTGTAGCTTTGGGTCAGCAGGATTGACCCTTATTTGCATGCACCATCAGGGTGAGTTCTCTAGCACTCTTCCAGCTAGGCCTCGCATTGCCTCTATCAGCAGGAGAGCTAGGGTCAGCTTTCATGATCTCCGGTGCTCACTTGCACCCAACAACTCCAGAGCCAGCTCCACTGTGCTGTCGAGGCTGCTCTCCCACGTGCTGCAGGCAGGGCAGGGCAGGGCAGGGCAGGGGATAGGGTAGGTGTGGTTGGGGGAGGAGTATTCTATTCTTAAATCAGGTCTTAAAAAGAAATCTTTCTGGGAAGCCAGCCTTATTCCTTACATGCCTGTTCTTTAATTTGTTGTTGGATTAGCTGTGGAGTCCCCACCATGGGGGAAGGAGGTGCAGGAGCCAGTTGGTTGGCTATGTGTGATTTGATTCCTAGGAACACAGGCAGGGATTACTGTTCTGTAACTCCATGTAACTGTCAGCTAGTCTGAGCAGCTCTTAAAGTGTGTTCCTCTGCCCAGAATCCCTGTGGCTTCTGCTCTGGTTTGTTACACCTCAGAAGGTATCCCCTCCCCAAGCCTGCCATAAGCACCCTACACCTAACTAGCCAGCATTTCTAGAGATGGGTGCGCCATGGGCTTGTTCAGTCTCATGGACTGCTCTGAGTAAAGAGGCAGATGCAGACACATAGCCATGTGCACTCTACTGGGAATACTCCACACAGAGCCTATGCCAGGATTCTTTCCTCTGTGTAGGAGGCCAGCAGAACCTCATGTCAGAGAGCTGCAGACCTGGCAGGAGGTTTGGGCATGTTCTCTGGTGCTCTTGCTCCTGGCCTAACACTGAATGTCCTCACTAACGTTCTCAGAAGACTAGTTTTTACTAGTTACTGTTTTCTCCAGGGAGTGGATCCTAGTAACATCAGGCACACCCACATGCAGCACAGAGATGTACCTACCTAACCTGTAGCTTGTCCACTTCCTGTTGACTTGGTCCCAGGCATTCCTGAGGCTGAGCACCCACATAAGCATGGCTTTTTCTCCCCAG
Seq C2 exon
GATGTGTTTGAAATGCGCTTTGCCAAGATGCCTGATGAGCCTGAAGAGCCAGTTGTTACGGTGTCCTCCCCTGCAGTGCCACCCCCTACAAAGGTGGTAGCCCCACCCTCATCTAGTGACAGCAGCAGTGATAGTTCCTCTGACAGTGACAGTTCCACTGACGACTCTGAGGAAGAGCGAGCCCAGCGGCTGGCTGAGCTCCAGGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006770:ENSRNOT00000008963:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.256 A=NA C2=0.929
Domain overlap (PFAM):
C1:
PF0043920=Bromodomain=PD(44.9=93.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]