GgaINT0002971 @ galGal3
Intron Retention
Gene
ENSGALG00000013295 | BRD4
Description
NA
Coordinates
chrUn_random:28080856-28083989:-
Coord C1 exon
chrUn_random:28083861-28083989
Coord A exon
chrUn_random:28081066-28083860
Coord C2 exon
chrUn_random:28080856-28081065
Length
2795 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGG
5' ss Score
9.46
3' ss Seq
GGTTTTCCATCTCTTTGCAGGAC
3' ss Score
11.15
Exon sequences
Seq C1 exon
TCCAAACTGGAGAACCGGGAGTACAGAGATGCTCAGGAATTCGCTGCTGATGTGCGACTGATGTTTTCCAACTGCTACAAATACAACCCTGCTGACCACGAGGTGGTGGCCATGGCACGGAAGCTGCAG
Seq A exon
GTAGGGAGCTCCGTTATCTTCCCCTGCTAATTAATCCTGCGTTGTCTCAAAACAACACGAAATGGGTGGAGAATGGTAAGGAAACGACGGCCTAGTTTCGTTTCATGGCATCTTTTTCTCATTGATTCGTATTGATTTTGAAGGAGTGGGAGAAAACACAACGCTCTGAAGGGTCCCTTTCCTGCGCACAGCACCTGGAGAGAGCACAGGGGTTGTGCCACCCTCTCACTGCTGCCATGTCTGTTAATCCTGACCCTGTTTTCTGCTCTCTCCTGGTTCCTGCAGCACGAGAATGGTCTGTAATTCATGATACAGCCGCAGAAAGCTGCAGACGCTGAGTGCAGCTCTTAGCAGAGCTCTTCTGAGAGGCAGCTCTGAGCTCTGTGCCTCTCCTGCCTCTGTGCCCCCCGAGTTCGAGGCCCTGAAATCACCTCGTGATGCTCTTGTAAAACTGCAGTCAGGTTTGGGCTGGTTTAATTGGAGATCATCACACACTGAGTGTGTGGTTCAACAGCTTTTTGGTGTGGAATTGGCAGCATTCTGCATGTTACCTATTGCTCTGCTGGGTTGTATGGCAGGTGGACATCCAGAAACCACACTGCTCAGCCTCTGGCTGCTCTTGGTCCAGAGGAGAACTTCACAGCCACTTCCAGTGGTATTGTGGAGCGTTTTCCAGGAGCCTGAGGTGTCTTTTCTCTCACTCCATCCAATGGGGAAAGCTTTGCTCATTTGTGAAGCTGCTCCAGCAGCACTTGCACTGCGGGCCTGTGCATAAAACTGATCCCAGCTGAAACCAAGTATAAAAAATCTGATCTGAAATGAGATACGGATATGAGCAGCTTCACAGGGTGCTGCTGAGGTTTGGAGCCAGGCTGAGATCTCAGGTCTGGACAACGGGTTACTGAGTTCCCATCATCCACAGCAGCGCCACACATTGCTTTACACACAGCCCCATTTTTCACCTGTCCCAAAACGTGGCTCAGCATCAGCCCCCAACGTAACGCCCTGGTGCCACCTGGTGCTGCTTTGCTGTTGGAAGGTGAGTTTGGAGGAATTCTGGTGCTCTTGAGAGCTCGCAGCGGGTGCCGCTCGTTGCTTTAACCTGCTTGGTGTTGGTGCAAGCAAGGGCAGAAAGAATCCCTTAATTAGCTTGTTATCTGCTTCTTCGTTAGGGTTTATCTTTCATCTGTTCCTGCTGAGTGCACGTGGAGTGCTGAGGATTTTTGCAGTGTTGGGGTTTTGTCATAACTGCAGAATTGGTTGTAGTGGACTTTGCTCAAATGGATCCCGCTCTGCTTTCGTAAGGGCTTACCGAAAAGCTGCACAGATACAGAAGTGTGGGGAGGTTTTGTTTCTGACCCAGAGGATGGAAGGATGGTGTCTGCACAGCGTTGGCTGCTGGCGGTAATCAAGCACTGGATTTTCTGGTTCGTGGGAAACTGCAATTAGCTCATAAACACTCATTAAGTGCAGTGAGTCAGCGCATGGCAGAGGGAGCAAAGCCAGGAGTCCAGGCTCCTTCCCTGCCCAACCTTCAGTCCCTGTGCCAGGAGCCTGGGAGAGAATGCGGCATTGCTGCCAGCAGATGGAAGCAGCGAAGTGACGTTACAGCTCCGGAGGAGAGGAGCAGAGCTGGAGGAATGCAGCCCAGCTCATGCATGGAGGGAGCTCAGAGGTGGCTCAGGAAAGTGCTGGAGGACCCCATGGTGACCTCAAGGATGGGCCTGATCCGATATTTTGGGGGGCTGAAGGTGGGAGCTGCATGGAGAGGGACGCTGCTCGGTGCCTGGTGGAAGAATATCTCTCTCTGAGTTGTTGTGTGAGACATTGGAGCTGAGATTCACAATAGGGTGGTAGGAGCAAGGCACGCACCTCGTGCTCTGGGTTCTGCACCAGAGCTGCACACGTGGGGCGTACAAATGGATGGATGGTGACCGTGGTCTGAACATCACCCTCTGCTGAGCAGCAGAATTCAGCCGCATCCCCTCTGGATCCCTCCTTGGGGGCTCCCAGGAGTGCGTGATGACAGTGCAGAGCTTTGAACCGTGGGGTTGAGGTCTCTTGGAGCTGCCCAAAGTGGTGTTTCTCCTGCAAGTAGTGCTTGTTCTGTCCTGGGAAACGAAAGGAAGGCAAAATCTGAGGGTGCTGCTTTGTTCCTGTCCTGGGAAACGAAAGGAAAGCAAAATCTGGGGGTGCTCACACTCCCTGTGTGGGACCCGGAGCTGCTGGCTCAGTGCTGGACCTGAGAACATTGCTGGACCTGAGAACGTTGCTTCACCCGAAATACCATAAGCGGAACGTTGTGAGCACAGCACAGCCTTCACCCCCACCATGCTGATAAGGGACACAATCAGCCTTTCATTTCTTATCTCACTCTGAGGTCTGGACAGAAGTGAGTGTTCATCAGCAGAATAGCAACGTTCACGTCTGTGGGGTGAAAGGAAGGCGGTTTGGTGTCGCTGGGTGGTGGGAAGTGCTTTCCCAGCCTTGGGGTGTTGTGTTGGGATGGAAAACCACAGCGTGCCAACTGCTGCCCTCACGTTACCACCAGCACTGCAGCTGTTAAATGGCTCTTTACCTTCCTTACCTCTAAACTTTCCCCTCTGATCAAACCAAAGTCCCAAACGGATTCAAGGCGTGGAGGAAACGATCCCATCTGCAGCTGACAGCATCGTGTGTGCACGCGTTGGGGGCTTGGATGGAGACCCCGAGCACATGGGATACCCCGGGGATGATAACAGCCTGTGCTGTTGTGTGCTCTGCCAACCCCTGCATGGTTTTCCATCTCTTTGCAG
Seq C2 exon
GACGTGTTTGAGATGCGCTTCGCTAAGATGCCGGACGAACCGGAGGAACCGGTGATCCCGGCCTCTTCTCCGGTGGTGGTACCACCTCCAACCAAAGTGGTTCCCCCCTCGTCCAGTGACAGCAGCAGCGACAGCTCCTCCGACAGCGACAGCTCCTCCGACGACTCCGAGGAGGAGAGAGCTCAGCGGTTAGCAGAGCTCCAGGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013295:ENSGALT00000035893:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.093 A=NA C2=0.914
Domain overlap (PFAM):
C1:
PF0043920=Bromodomain=PD(44.9=93.0),PF057648=YL1=PU(23.9=97.7)
A:
NA
C2:
PF057648=YL1=FE(39.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]