BtaINT0026817 @ bosTau6
Intron Retention
Gene
ENSBTAG00000047443 | BRDT
Description
bromodomain, testis-specific [Source:HGNC Symbol;Acc:HGNC:1105]
Coordinates
chr3:51574867-51575405:-
Coord C1 exon
chr3:51575233-51575405
Coord A exon
chr3:51575157-51575232
Coord C2 exon
chr3:51574867-51575156
Length
76 bp
Sequences
Splice sites
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
3' ss Seq
AAATTTAACTTTTGTTACAGTCT
3' ss Score
5.38
Exon sequences
Seq C1 exon
CTTCAAGCTGTTCATCAACAGCTACAGGTTTTGTCCCAAGTACCTTTTCGTAAGCTAAAGAGAAAGAATGAGAAGTCTAAAAGGGAAAAGAAAAAAGAAAAGATTGATAACAGAGATGAAAATCCAAGGAAAAAGTTTAAGCAAATGAAACTAAAGGAAAAATCCAAGCGCAA
Seq A exon
GTAAGTATCTTTAATGATGCCTTATTAAGATAACATTATCTGAAATACATTTGATTAAATTTAACTTTTGTTACAG
Seq C2 exon
TCTGCCAAAGAAGAAGAAACCACAGGTCTTCACTATGAAATCTGAAGATGAAGATAATGCAAAACCTATGAACTATGATGAGAAAAGACAGTTGAGTTTGGATATAAACAAACTCCCTGGAGATAAACTTGGGCGAGTCGTTCATATAATACAATCCAGAGAGCCTTCATTGAGAAATTCCAACCCTGATGAAATAGAGATAGACTTTGAAACACTGAAATCATCAACACTGAGAGAACTGCAAAAATATGTTGCTGGATGTCTAAGAAAAAGATCACTAAAACCTAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000047443:ENSBTAT00000004850:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.757 A=NA C2=0.827
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTAAAGGAAAAATCCAAGCGCA
R:
ATGAACGACTCGCCCAAGTTT
Band lengths:
169-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]