GgaINT0036996 @ galGal4
Intron Retention
Gene
ENSGALG00000006031 | BRDT
Description
bromodomain, testis-specific [Source:HGNC Symbol;Acc:HGNC:1105]
Coordinates
chr8:13251773-13252320:-
Coord C1 exon
chr8:13252139-13252320
Coord A exon
chr8:13252066-13252138
Coord C2 exon
chr8:13251773-13252065
Length
73 bp
Sequences
Splice sites
5' ss Seq
CATGTAAGT
5' ss Score
8.31
3' ss Seq
CAGTAAGCTTCTTTTTGCAGTCA
3' ss Score
3.39
Exon sequences
Seq C1 exon
CTTAAAGCTGTTCACCAGCAGTTGCAGGCTTTGACCAGAGCATCCTTACCTAGATTGAAAAGGAAAAAAGAGAAAGCTAAAAGAGAAAAGGGGGAGAACAAGGAAAAAGCTAAAGCAAGCCTGATTCGAAAGAAGAAAGATCTAAAACACAAGAAGTCTAAGAAAAAGCAGTCTTCAAACAT
Seq A exon
GTAAGTGTGGGGGACTTGTGTGGGCGTAAAATTATTTTAAACTACAGTTACTGCAGTAAGCTTCTTTTTGCAG
Seq C2 exon
TCAATCAAAGAAAACCATCCAGCAGGTCTTGTTGGCACATAAGTCAGAAGATGATGATGGTGCCAAGCCTATGAATTATGATGAAAAAAGGCAGTTGAGTTTGAGCATAAATAAGCTGCCTGGAGATAAGCTTGGGAAAGTAGTCCATATAATACAGTCAAGAGAACCATCACTGAGGAATTCTAGCCCTGATGAGATAGAAATAGACTTTGAAACTTTGAAGGCTTCAACGCTCAGAGAATTAGAGAAATACGTGGCAACCTGTTTGAGGAAGAGACCAAGAAAGCAGCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006031:ENSGALT00000009708:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.902 A=NA C2=0.747
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGAAAAGGGGGAGAACAAGGA
R:
GGCTTGGCACCATCATCATCT
Band lengths:
170-243
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]