RnoINT0026473 @ rn6
Intron Retention
Gene
ENSRNOG00000002073 | Brdt
Description
bromodomain, testis-specific [Source:MGI Symbol;Acc:MGI:1891374]
Coordinates
chr14:3429193-3429857:-
Coord C1 exon
chr14:3429688-3429857
Coord A exon
chr14:3429474-3429687
Coord C2 exon
chr14:3429193-3429473
Length
214 bp
Sequences
Splice sites
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
3' ss Seq
AATATCTAATTTTGTTACAGTCA
3' ss Score
6.09
Exon sequences
Seq C1 exon
CTTAATGCTGTTCATCAGCAACTACAAGTTCTGTCCCAAGTTCCATTACGTAAGCTGAAGAAAAAGAATGAGAAGTCTAAAAGGGCACCCAAAAGGAAAAAGGTTAACAGAGACGAGAACCCAAAGAAAAAGGCTAAGCAAATGAAGCAAAAGGAGAAGGCCAAGAGCAA
Seq A exon
GTAAGTATGCTCAGTGAGTGAATGCGTGGGAGGCGAGCTCGGTGAAGGACCGCACATTTAGCCTCTGCAAGGTCCTGGTTCTATCCTCCTGCCTAGATTAAGTAACTGATTAAGATGAAATGAATGTCTGTGTGATGTGGGTGCATTGTATGAAATTCCCACATCAATAAAAATATGTTTAAAAACATGAAACAAATATCTAATTTTGTTACAG
Seq C2 exon
TCAACCAAAGAAGAAGAAGCCACTTTTGAAATTGGAAGAGGAAGACAATGCGAAGCCTATGAACTACGATGAGAAAAGGCAGCTGAGCTTGGACATAAACAAACTGCCTGGAGACAAGCTTGGTCGAATAGTTCATATAATACAGTCAAGGGAGCCTTCCCTGAGGAACTCCAACCCAGATGAGATCGAGATCGACTTTGAGACTCTGAAGGCATCCACACTTAGAGAACTGGAGAAGTACGTCCTGGCCTGTCTGAGGAAGAGGTCGCTGAAGCCCCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002073:ENSRNOT00000061538:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.895 A=NA C2=0.647
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAGCAAAAGGAGAAGGCCA
R:
TCAGCGACCTCTTCCTCAGAC
Band lengths:
300-514
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]