BtaINT0031091 @ bosTau6
Intron Retention
Gene
ENSBTAG00000008153 | CAMSAP2
Description
calmodulin regulated spectrin-associated protein family, member 2 [Source:HGNC Symbol;Acc:HGNC:29188]
Coordinates
chr16:81307146-81312829:+
Coord C1 exon
chr16:81307146-81307285
Coord A exon
chr16:81307286-81312735
Coord C2 exon
chr16:81312736-81312829
Length
5450 bp
Sequences
Splice sites
5' ss Seq
AAGGTACTC
5' ss Score
7.46
3' ss Seq
ACTTTCTTGCCTCTTTTCAGAGT
3' ss Score
11.08
Exon sequences
Seq C1 exon
ACATTTGCTTGAAAGAAACCATGTCTCTGGCTGATAGCCTCTATAACCTGCAGCTGATCCAAGAATTTTGCCAAGAATATTTGAACCAGTGTTGCCATTTCACCCTGGAAGACATGCTCTACGCAGCTTCCTCCATAAAG
Seq A exon
GTACTCCCTGGTCCCTGCGCTTGAAGGTTGTGGGGAAAGCACACAGCCAGGTGCAGAGACAGTCTAGCTGTGTTAAGCGTACAAAGTTAACTGTAATTTCAGTCAAAATAGTTGGTTAGATTTTTCTGCTGATTGTGTTCTGTTGTAACGCACACTGTCAGCTACAGGTGGCTTTTGCAACACAAAGAGTGAGTCTGTGGTCCTGCAGTTGTTAGTGCAGTGGAGAAGGAGCCAGCAAGTGCTTCTGGGCCCTCAGCAGGGCAGTGGGCTCCGGGAAGAAAGGGTCCTTCTGTGCCAGAACTTGAGACACAACCTCGGGAAAGAAAGGGGGAAGGAAAGACCAAGGTTGTCTAGAAATGAACCTTTTAAGAAGTAACTCCTGGCAATATCCTGGTGGCCCAGTGGTTAAGATTCTGCACTCCCACTGCAGGGGATGTGGGTTCAACCCCTGGTCAGGGAGCTAGGGTCCCGCGTGCCGCACAGAGCAGCCAGTATATATATATAATTTTTAGGAGGTAAATAAAAGTACTTGCTTTTATCAGCTGTGCGCGAGTCCCTTGCTTCAGGACGATGTCACAGGGCCTCCTAGCTTTGCTCAGTTGCTCAGTGCGCTTCTTCCAAGAGCTGTTTATTGAGCACCTTGCACTGTTCCGGGCTTTTTGGGTGAATCAGCAGACAATCAGAGATCCATGTCCTTTCAGAGCTTACTTTGTAGTGAAGACAGACACGTGTCTCAGGCGTGATGGCTTCTGAGCTGCAGGTTCCAGAGCTCCGTGGTAGGAGTGATGCCTTTCTGTTCCTGGCAGCTGCGGAATTCCTTCCCGCCCCCTGTGCCCTTGCCTGAAGTTCGCCACTTCTATGTAACGTTAGAGAGGAACAGCCTTGTGTCAGGCTTGACACCTGGCCGTATTCACGGTGCCCACCTCCCTGAAGGCTGCCATGGGCCTCCTGGAGCCACGCTGCCGCTCGTGTGCTTGCGCTCCTTGCTCTCTGCCCTCTTTACCCTGAGCCCCTTCCTTCTTTACACACAAGGCAGGGGACACAGCCAGCCAGCCATGCAGCTGCTCCCAGAGCAACCACTGCCCACTGCCCAGCCATGACCAGCCATGCAGCTGCTCCCAGAACAAACCACTGCCCACTGACCAGAACAGCACCCACTCCCCACTGTCCGACACGTCAGAAGAAAGACCTTGATTGATTTTGAATGGTAACACCATTTTTACCAAAATGGGAGATATTTTCATATTTATCTTGTTAATGCTTTTTCTGATTATTGCCTATTAAAAATTCTAAATGCCACTACTATAATCTCAGGGAAAAAAATCGTCTCATTAAGTACATTAAACTGTAAGAGTACATTTGCTTAAGTCATATACTTTGGACTTCCCATAAATAAAATGTAACCTTGATGTTTAGATCAACTTACTCTGGGCATAATCAAGATATAAAGATATTTTCTTAAATGAGGCGTTTAAAAAATAGATAATTATCTGCAGAGAACACTGTCACTTTATCTATTTTGGTTCTCTGCTAAATTATTAGACCCACATTTTGTCTTCAAATGAGTATTTTAAGATTCTGCATCCTTGAGAAGTTGCTTGGTCCATGGTGCTGGGCATCCCATCGTGTGTTGACATGAGCAACAAGTATTTGTGGGGACGTGGGGAATGAGCCTTCTTTCCCCCACGCTGGATGTATACACTGGTGTGCCCTTTTTAGAGGGCACTTTGGTGGCAGTCCATTCTGAAGGAGATCAGCCCTGGGATTTCTTTGGAAGGAATGATGCTAAAGCTGAAACTCCAGTACTTTGGCCACATAACGCGAAGAGTTGACTCATTGGAAAAGACCCTGATGCTGGGAGGGATTGGGGGCAGGAGGAGAAGGGGACGACAGAGGATGAGATGGCTGGATGGCATCACTGACTCGATGGATGTGAGTTTGAGTGAACTCCGGGAGTTGGTGATGGACAGGGAGGCCTGGCATGCTGCGATTCATGGTGTCGCAAAGAGTCGGACACGACTGAGCGCCTGAACTGAACTTGGTGGCATCTGACCGGATTGAAAGTGCACAGGAGGCTGTGCTAGTGTTGTCCCTGGGGTGACAGGGGGGAGCAGCTCGTCTTAGAAGGGGCGCGATGGGGGTGTCCTGGAACGTGGTTGAGCTGTGTAAGAGGAGGAGGCAGAAAGCTCGCAAGAGTTACCAAGAGAAGCACCCGGTCGCACACATTATATATAACGTGATGTGATTTATCTCTCTTTTTAAAACGCTGTTTCCATCTGTATGCACATCTGCACATATATATAGACACACAGGAAGAGGTCTGCAGAGAGAGACACAAAACTGTTAGCAGGGGTTTCTTCTGATTGTGGTGTTAGGATGTGGACAAGAGGAGTTTGTGCACTTGTTATTCTGTTTATTTGTATTCTTTGATATTGTTTACATTGTTCAAGAATGTTAATTTATAGCTGCATGACCTTCTTAACTAAAAGAAGAGCTTTTAAATGAAATTAATTTGGTATCATTCCTAGAATATGGTGACAGATTTGTTGCTGTTTAATCTTCGCAGATCCAGAAAGGAATTCTCTTCATAAACTTCAGTTACTGGGGAAATCATTTCTTCCTGTGCTGACACCTTGTGGCCAAGCACAGTACAGTTCTGTTACTAGGACGGTTGTCTGACCAGGGAGCCTAGAGCAAATTTCCCAGCTTCTCTGAGGTGTAATTGACACGTTGTTGTTGTTCACTCGCTCAGTCACGTCCAACTCTTGCGACCTCATGGACAGCGTCTGTGGGATTTCCTAGGCAAAAATACTGGAGTGGATTGCTATTTCCTTCTCGAGCGGATCTTTCCAACCCAGGGATCAAATCCGTGTCCCCTGCATCAGCAGGCGGATTCGTCACCACTGAGCCCCCAGGGAAGGCGTGACTGTAGAAGTCTAAGGTGCTCAGTGTGTGGATCTGATACGCACATACTGCAGAGTGATTGCTACACCCTCATCACATCACGTCATCACCATTTCTCTGATGTGAGCATTTAGGATCTACTTTCAGCAGCTTTCAAATCTGTGATGCAGTGTCATTAGCCACACTCATTAGACCCCAGGACCTATTCACTTTATAGGCGGGGGCTGGCACAGCGGAGCAGCACATGCCCCACCCCAGTCCCTGTATCCCCCACTCTGCTCTCTGCTGGCTCCTTAGACTCCACGTGCAGCATACCACACACTGTGTGTCTCTGACTTACCTCACTCACTACAGTGCCCTCAGGAGCCATCTGTGTTTTTGCAAATGGCAGGATCGCCTTCTCTCCTCAGGGCTAAGTAGTGTTCCATTGTGTATATATACCACATCTTTATCCACCCACCCGCCGTGGACACTCAGCTTGCTTCCTTGTCTTAGCTGCAGTGAGCATGGACGTGCAGATCTCTGTCCAGGATCCTGTTTTCGTTTCCTTTGGGTGTGTACCCAGATAGACCTGCTGGATTCTGTGGCAGCTCTGTTTTAATTTTTGAGGAGCCTCCGTACTGCCCCATACTGCCTTCCATAGAGCCTGCACCATTTTGCATCCCCACCAGTAATGCTCAAGGCTTCCCTTTTCTCCACACCCTCATCAGCACTTGCTATTGCTTACCTTTTTGAGGATGGCGATTCTGACAGGTGCCAGGTGGTATCTCATTGTGGTTTTGATTTGCATTTTCCCTAATGATGAGTAGTTTTGTTGAGCACCAAGGTCCTTAAATATTGATTAATTTCCTATAACAGACAGTTATGGAGCACTTAACAAGTGTTTTTTCAAAACATATACACAGCTTTCAGTTAATTGTACTAGCAGAGCAGAATCTAGCACTGGTACTTAAAATATAATTTTACACCTTGGCTTTAGAAAGTGTACTGTGAGTTAAGTATAAAGAATAAATGTAAATCACAGTCATCTTACTGCCCAGAGATACTCCCTATCAATGTTTTGCCTATGACTGGCCTTTTTTATTATGTGTTAACTTATTCATTTATACATTCATTCAGTAAATATTTATTGGGCATCTGTCACGTACCAGGCACTGCCTTGAACACTGAAGATAGAGTGCTGAGCATGGCTTTGTCCTTTTACCATAGAGCTGGCTGGGTAAGAGGAGGAAGCCTGGAGAATATGGTATTTGATGAAGCTGGGGAAATTGAGGAGGGCCCTGATCAAGTACCACTTGTAACCTGTAGTCAGTCTTTCCCTAAGGGTGGGGAAAGTGGGGGAAAGAGTGCTGCATTTTGAGAAGTTTGACTTAATAAGTCAAAGAAAAGGGGATTGTATTCTAACCAAGCGGTGAAAACATTTGAATCAGAGTAATTATGATGAAGATGGGGAGAAGTGGGTGGGCTCAGAGATGTTTAGCGTGCAGACTCTGCAGCCCTGAGGATGACTTGGTGTGGGAAGAGAGAAAGAAGGGGGCATGGGGCGACTCCTAGGTTTCTGGTTTGTTCCCTGTGATGGCAGTTGTCATTCAGGGAGATAAGGCTGGAACTGGATCAGGGTTGTGGGGAGGATGATTGGTGCAGGTAGAGAAACACACGAGGAAATGCTCGAAGGCCACTGCATGTCTCAGGACAGTCACGTGTTCCGGAGTCACCTGATAGGGGCGGGTGGCAGTCTTCACAGAGGAGACAGATCGAGAGTATTGGTGCCACTGAGAGGTCAGGTTCAAGGGAGACTACAGAATCTGTTTGATTTAGTACATAGTCGTTGGTGACTTGAGCAGATGCAGTTTCGTGGCTGCGTGCAGTGCGGGAGTGGACTGGGAGTGGAGGGCTGGGACCGGGTGGGTGGGTGGGGGAGGCCGCCTGACAGAAGCCTGTGCTTCTGAGGGCTGGGCGGGGTGGGGGCGGGGCCAAGGGTGAGGGTGGGGCCGGGGGCGGGCCGAGGGGCAGCCGGAGGAGGGGAGTAGGATGAAGCTTGTGCCTTGTGCTCAGTAGGAGAGACTCGAGCGGGCTTACTTATTTTTTAAATGTTTTTAGTGTTTTGGCCATGCTGCGTGGCATGCGGGGTTTTAGTCCCCCAACCAGGGATCAAACCCAAGCCGCCCCCTGCATTGAAAGCACAGAGTCATAACCACTGGACCACCAGGGAAGTCCCTGAGCTTGTTTAAAAGCCAAGTAGGTCGGACACGATTGAAGCGACTTAGCAGCAGCAGCAGCAGGACGGGTTCAGCCTAGGGGGAGAATGAATGTGTCGGAGAAAGAAATATAGTTGAGAATGAAAGCTGCTGAGAAGATAACGCACAACACAGCCAATAGAGATTATAAGAGTTCTCATTGCTTTCTTTTTTTAATCACAAATTTCGATGAGTGACTGATATTTAAAGGTGTATTTCAATAGGTAACACAGAATAAAATTCTCCTTATCATTGCTTGTTGGTCAAGCTTTACCTGATTTTCCTCCTGACTTTCTTGCCTCTTTTCAG
Seq C2 exon
AGTAACTACCTGGTGTTCATGGCCGAGCTCTTCTGGTGGTTCGAGGTCGTGAAGCCCTCCTTCGTCCAGCCCCGTGTCGCTCACCCACAAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008153:ENSBTAT00000010723:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.094
Domain overlap (PFAM):
C1:
PF119713=CAMSAP_CH=PD(50.0=89.4)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development