MmuINT0028505 @ mm10
Intron Retention
Gene
ENSMUSG00000041570 | Camsap2
Description
calmodulin regulated spectrin-associated protein family, member 2 [Source:MGI Symbol;Acc:MGI:1922434]
Coordinates
chr1:136287900-136293019:-
Coord C1 exon
chr1:136292880-136293019
Coord A exon
chr1:136287994-136292879
Coord C2 exon
chr1:136287900-136287993
Length
4886 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
TTCTCAACTCTCTTATATAGAGT
3' ss Score
6.49
Exon sequences
Seq C1 exon
ATATTTGTTTGAAAGAAACTATGTCTTTGGCTGACAGTCTGTACAATCTACAGCTGATTCAGGAATTTTGCCAAGAATACTTAAACCATTGCTGCCATTTCAGCTTGGAAGATATGCTTTATGCTGCTTCATCCATAAAG
Seq A exon
GTGAGTTCAGTCATTCTCCTTTTAGCCTTTCGTTAAAGTGTAAAAGCTGTTGCAACAAACTGGGGTCTCAGTGGTACCACAGGAGCTAGATTGGGTCTCCTGAAGAAGTAGCAATAGAAGGGGGGAAGGGAAGTGGGGCGGGAGGAGCTGGAGTTCAAGGCCAGCCTGAGGTTGTGCTGAGTCTGAGGCCAGCCAGGAAATCCAGCAGAGTCTAGCTCCAAAAGAATTGAATATAAAACAAAAGTTACAAAATAACTTTATCAGTGAAGAATTGGGGGGGGGGGTGGTGCTTTTTCTTCTTTAAATATCCATTGTTAGTTACAAGTCTTGTACATTGTAAAGGCAAACAAAAAGTTGTCTACAAATTGATCTTTTGTTTTAGTGTGGGTAGAGTAGAGTATGACCCATTAAATGGTTTTTGATCATAGGTAAATGTAACAAATGAGACTCTTCCTTTAAAAGCAAGCTGTGTGGGGGTGTATGCCAGTAATTCCAGCCTTCTGAAAAAAAAACGATGGGGAGGCTTGAGTTCGGTTGATGCCTGAGGCTGTAATGAAACACCCTTCTAACGAAGCACAGTGATGAGCCTTGCTTTTTCTTGAAGGAGTTTTATTTAGAGAATCAAATGAAAGGCTTTGGTGTGCATGTGTATTTTTATTTGTGTGTGTGTGCGCGCGCGTGTGTGTGTGTGTGCGCGTGTGCGTGCGGGTGTGTGTGTAGAATTACAGATAGGACCATTACTCCTTGCTTTTATGGAGATGCTGGGGGTTCAGGCTTGGGTCTACTCTCCCGCAGCCAAGCCGTCTCTAGCCTCTCTGGTGTATTTTAATCAGATGTCAATGTGCTTTTTGCTCAGGGTTGTTTTGCCTCTTCAGGGCTTGGGGCTTCCAGGTGAATTTCAGGATTGTGTTTTCTAGTTCTGTAATTTTGATGGGAATTACATTGAATCTGCAGATCACGTCAGTAATTTGGTCATTGTAACAGTATTAATTTTGTCAGTCCATGTGCTGCTTCTGTTTCAAAGCTTTAGGAATAAATGGTCTTATATATTTAGTTTGACTTAGAGGTAAGTTTTCTGCTGAGCCTAGTCAGAGTTCCAGTGCTAGTCCTACTTGGAAGTGCTCAAGAGCTCCTGTCATGATGATGCTCCTGTCTACTTACACTTGAATTCTTAGTCTCTACTATCTCCTCTTTTTCCTTTGTCCATTTCAGGATCTCCAAATGCAGAAAGTAGAGCCAATGATAAAATCGTTTCCAAATGGGGCAGTAGTCGCAGTGACTCATGGTCACTCCCTACTCTGACACATCAAATGGAAAACCTTGATTAATCAATTCTGAAGGTTTACCTACACCGTTACTAACTATAGCTTACTAATGACTTTTCTAGCATATGTTACCAAGTATAAGTACTACTTCTATAATATGAAAAGTGGTCAGACACCTAAGATGTATTTGTTTTATACATTAGTTTGGTATAGACTAAGTTTGGTAGTGTTCCTTCCTGTCCATTTTGGAGAGCAGAACAGAATATAGACTTTAAGTAAACCATTAACCCTGACATTTAGAACCTTGTAAGCATAGCCACGAGGTTGAATGCAGAGCTCTATCTTAAGGCTCTAAGCTCGAGGGAGGTTGCTTGGTCCATGTTGCTGGGCACCTCATTTTCACTTTAACTTTTAATAGTGGAAAATGAGCACTGCCTTTTCCTCTTATAGAAATACAGGTTGGGATCAGACTGCTTATAGGGCTGTTGGACATTGCCTGAGCAAGTGCCTGTACTGGATCCTAAGTACCACCCAAAAGAGCATCAGAAGGTCTGGCTGTGTCCTAGATAGAGCCTAGCTCCCTTGCAGTGCACTTGGCAAGCTATTATTTAGAGGGCAGGGGTGGCCATCGAAAGGCACTCTCTCTCTCTCTGTCTGTCTGTCTCTGTCTCTGTCGCTCTGTGTGTGTTTGTGTGTGTATTTTAAACCTGAGAAAGGTTTTCTCAGGTTTTTTTTTTCAGGGCTTTTTTTTTTTCTTCAGGGCTAGGGATTAAACTCAGGACCACTGACCCATATTCCCAGCCATTCCCTAAACGATTCATTGTAATAATTATTTACATGTTGTATTAACTATTTGTAAGTAGTGTAGAGGTGATTTTAACTGTCTTGTCGGCACTGGAGCGATGGCTCAGCTGGTAATGGCTCATACTACTAAACCCAACACCTTGAATTTTGTCCCAGGACTCACATTGTTGGGGGAGAGAACCAACACCCCGTGGAAGGGTTCGAATGGGTTCTATTCATGTACTGCAAAGCTTACATAGGGACTTAAGCATCCATAAATCTTTAGTGTCTGTATGGGGTCCTGGAACCAACTGCACACAAATGCTGAGGGACACATTATAGATTCAGGAAAAGGATGATTAGGGTAACTATAAAACAAAAGTAATTTTTCTGAATGTGGTGTTGGATATTGGTGAAGGTGTGAAGATTTGCGAGACTTCTCCAGTCTTGGTAACTTCTCTGGCACCATCCTGGCTTCCATTGGCATTTGCACTCACATGCACAAACCCTCGTGTAGGCACATGCTTCATATATTTAAAAAGTAGGCCAGGGTTGGTGGCGCACACCTCTAACCCCAGCACTCAGGAAATAAAGACAGGATGATCTCTGGGAGTTAGAGGCCAGTCTGATCTACACTGTCAGTTTTACATCAGCCAGGGCTACATAGGGAGAATCTGACTAAAGAATATATGGAAAGACGATTTTAAATTATTGTACCATTTCTGGAACATGACCAGCTTATTGTCATTTAATTATAATTTTATAATGAAACAATCTCCAGATTAATTACTAGAAAAAATATTTTTACAATTCTGCCATCTTGTGGCCAATTATTGCCATTATGTTATTAGGACAATTCTTACCAAGGTCCTTAAAATAAATACTCATTTTCTATCAACTCCTTCTCTATAATTACTGCACATTTAAGGGGTGTTTTTTCTAAAGTCACCTTCTAGTTAACAGTAGTAGTAGAGTAGAGCCTACTACCAGTACTTACCAAGTTTATCCTTTGGCTGTAAAGGGTATACTGTAAAGATTATAGCAGCGTATAGTCGTAACAAGCTTAATGTGTCAGTTGGCCTTCTGTAACTGTAACAGGCATCTGGGTCAAGGACTAAGGAAGGATTTATTTCTGCTTAGTTTCAGAAGTTTTGATCCATGCACAGCTGGCTCTGTTTTTTCTCAGACGTTGGTTGAGGTGGGCCACCATGGTGAAGAAGACATGGTGGATCAAAGCTGTTTCTTGTGATGAACAAAAAGCAGAGTGTGCCTAAGCTAGCTGGTTTTGGAGGAGTGGCCCAGCTCAGTGTGAGACTGGAATGGTTCAGCAAAAGGAGGGGAGAAGTGTGGGGTTAGTATGAGTCTGATCTTAAGGAATTTCATCCGAAGGTCAAAGTGTAGGGGTGAGGAGAAAGAAGAGGGCGAGTCACTGAGAGAAGGTCTTATTTTTCAGTGGAAGAAAGTTGAAAGGAAGGGTAAGTCGTGAGTATAATTAGGATTGCAGAGCCTATGAGAAGGCAGGCAGGGTGAGTCCACAGTGTAAGGGACTGAAACATGCTCTTTTTAAAAGAAAGGACAAATGTCAATAGCTTCAAATAATAGCTGTTTATGTGTAAGCATTGGACTGTTTTGGGAATCCACAGTGAAAACAAACACTGAAAGTAAAGTAAAAACCCAGTGGGGTCGTGTCTTGTGTTCCATGTCCCCACAGTACCCCACCACACACGTCCATAGCCACTGCGATGTCTGGGAAAGTGTCAGAGACCTTTTTAGTCCCCTGTGTTTCCAGTCTTTGTTTTATTCCTGGCAGTCACAGTTGCTCAAATCAGAGACTTGGAGACGTCCTTGGTTCCTGTGCTCTCAGGAGCCATAAGATGGCAGATGAACATGAATGTTACCAGCTTAAATATGAAAAACCCAGGCAATAAAATCTAAGGAACCCTGTTCATGTTAGCGCCTTGAGGATTGTTCAAAATTAGCAAATATGTGGAAGGCAAGACATCAGAAAACACCCACATTTCCAGTGATAATAGCCATAATGAGGAAAACGGGTTTTGTATAGTGCTATTGTTAGAAATACATTAAATACCTAAAATTGAAGTTATTCTTTATATATATTTTAACATATAAGCCTAATTCTAGTACAGTAGGACACATCTTTAACACCACTGCTCAGGTTTAAGACTGTTTCAAAACGAAAAAAAGAAGCCCCTAAATCATATAAATGTATGAACATAGTTATGTGTATAATTCTATAGAAGCATGCTTTTGAGAACTCCTTTAAGCCATTTAAAGAATTATTTGCATTTTCAAGTATAAGTAATAAAAGATTGTTATCCTTAATGTTTTCAAAATTAGAAGCATTAAATGATAAAAGTAGTGTTTTTATATATTTCAAGATTATTTTAGTCATAATAATATATAGAGTTTGTTATTACTTAGCATGTGGCTAACTGTTGAATTTAACATTATCAAACATTTGGATACAATATTTAAGTTACATACTTTTTCTAGAAAAATCTTACTTTTTTAAATGGTAAATGCTTTGTGCTATGTGTTTATGTTCATCCTGGAAGAAGGGACATTTGTTATCACAGAGATGTATATAGGGAGAGACTGCAATGTCTGGAAGCTTTGTATCAGAGGCCTGGACATGTGTGGTTACAAGTTCTAAACTTCTTACTCCAGCTTTAATACAACATAGTGAACATTTTTAAATAACAAGTGCATAGAATTCAAACGTATATTTGAGAAGGTAAAGCATAACTTTTTCACTATTACATGATTGGTTTTACCTAATGCAGGGCTTCTTTTAATTTTCTCAACTCTCTTATATAG
Seq C2 exon
AGTAATTATTTGGTGTTCATGGCAGAACTCTTCTGGTGGTTTGAAGTTGTGAAGCCTTCATTTGTGCAGCCTCGTGTTGTCCGTCCACAAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000041570:ENSMUST00000192001:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.023
Domain overlap (PFAM):
C1:
PF0030726=CH=FE(28.0=100)
A:
NA
C2:
PF0030726=CH=PD(8.5=43.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types