BtaINT0031095 @ bosTau6
Intron Retention
Gene
ENSBTAG00000008153 | CAMSAP2
Description
calmodulin regulated spectrin-associated protein family, member 2 [Source:HGNC Symbol;Acc:HGNC:29188]
Coordinates
chr16:81317653-81320093:+
Coord C1 exon
chr16:81317653-81317722
Coord A exon
chr16:81317723-81317968
Coord C2 exon
chr16:81317969-81320093
Length
246 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAC
5' ss Score
8.14
3' ss Seq
AGCCTTCTCTTTTTTTTCAGATC
3' ss Score
11.3
Exon sequences
Seq C1 exon
GAGGAATAAGAAGGTCTTCGTCTATGTCCTATGTCGATGGCTTCATAGGGACGTGGCCCAAGGAGAAAAG
Seq A exon
GTAAACAGGAGGCTCACTCTCCGTGTACTCGCCTCAGCGAGAGGCACTCCTTCCCCACCCCACCACCCCTGTTGCTAGCCAGAGGATGGAGTGACCTTGGTGACAGGTGTCCTGACAGCCTTACCCCGCTTCCACCCCCAGGAGGATGTGATTGTGAGAAATGAGGGAGAGAAGAAATCACATCTCTCAGTGATACCAGATCCTGTCTTTTCTGGGGTTATTTAAGAGCCTTCTCTTTTTTTTCAG
Seq C2 exon
ATCGTCAGTGCATGGAGTCTCATTTGATATTTCTTTTGATAAAGAAAACGCTGTGCAGAGATCCACCTCCAACCGAGGAATCACTCGCTCCCTTAGCAATGACGGGCTCGCCCTGAGCAACCACCGCGCAGCCAGGAACAGCCGGAAGAACCTGGCCTTCAAGCCGGTGGACGGGGAGGAGCACGCGGCGGGCATCGCGGAGGAGCGCACGGTGGGCTCTCACGGTGACCTGACCACCTACGCGCCCCGGAGCACAGGCGAGCTGAACTCCAACGAGAGCACGCACTACAGGTTCCCCAACGGAGCGCTGCACAACAGCGTGCTTCTCGACGAGGTTGGCAACCAGGTGGGGACCCCGAGCATCGAAGAGGCCTTGCAGATAATCCACGACACGGAGAAGCCCGCCCACACCCCGAGGCCGGGCCAGCTTGCCAACGGCTTCTTCCTCCACAGCCAGGAGCTGAGCTTCCTGAACGCCGGCGTCCCGCGCAGCCAGTCCAGTCCCGAGAATGTGGGGGACACGCGAGGGGCCTTGAGTCCTGTCACAGACACCACGGAGGTGGACACGGGCATCCACGTGCCCTCAGAAGACATTCCGGAAACCATGGACGAGGACTCGTCCCTGAGAGACTACACCGTGAGCTTGGACTCCGACATGGATGACGCGTCCAAATTCCTGCAGGACTACGACGTGCGGCCCGGCAGCACCAGAGAGGCCTTGAGCCCCTGTCCCAGCACGGTCAGCACCAAGTCCCAGCCCGGGAGCAGCGCCTCCTCCAGCTCCGGGGTGAAGATGACCAGCTTTGCCGAGCAGAAGTTCAGGAAGCTGAACCACACGGACGGAAAGAGCAGCGGCAGCAGCTCTCAGAAGACCACGCCCGAGGGCTCGGAGCTCAACATTCCCCACGTGGTGGCCTGGGCCCCGGCCCCTGAGGATGCGGGCCTCCCGCACGGCCGGGACACCACGCAGCTGCTGGCCTCCGAGGTGGTGCACCTGAGGATGAAGCTGGAGGAGAAGCGGCGGGCCATCGAGGCCCAGAAGAAGAAGATGGAGGCCGCGTTCACCAGGCAGAGGCAGAAGATGGGGAGGACGGCCTTCCTCACCGTGGTGAAGAAGAAAGGCGACGGGGTCTCCCCGCTGCGGGAGGAGGCGGCGGGCGCGGAGGACGAGAAGGTGTACACGGAGCGGCCGCGCGAGAAGGAGCCGCAGAAGGCGAACGGGCCTAGGAGCAAGTCCCCGGCGGACCCCAAGGAGGGCGCGGAGAGCCCTGCGGGCAGGTGGCCACCGGCCCCTAGCGCGCCCGGGGACCCCGAGGGGCGGTGGAGCCCGGCTGGGCCCGCGGAGGAGCCGCCGCAGGACGGCGAGCTGCTGGAGCACACGCGCTCCATCGAGAGGCTCAACGCGTCCCTGCACGCGCTGCAGCGGGAGATGCGGCGCCTGGCGCTGCAGCAGGAAGCACTGATGCACATGCGCGAGCAGCAGGCCTGGGTCATCTCCCCACCGCCGCCCTCCCCGCACCGGCCTGCGCGCGACCCGCCCCGCCCGGCCCACCCGTCCCCGCAGGCCGCGCCCAGGAAGAGCGCGTCCTTCTCTGTCAAAAATCAAAGGACTCCCAGGCCCAGCGAACTCAAGATCACGCCCCTGCACCGCACGCTGACGCCCCCGCGGTCTGTGGACAGCCTCCCGCGGCTCCGGAGGTTCTCGCCGAGTCAGGTTCCCATCCAGACGCGGTCCTTCGTGTGTCTGGGCGACGACGGAGAGCCTCGGGCCCAGGAGTCTGGGCGCAAGGACGGAGTGAAGGAAGAGGAGGAGGGGTCGGCGGGGCCTCCGGAGCACGGGGAGGCCCGGCCCCCACCCTCTGCGGCCCCCGAGGGCCCGGCCGCCCTGGCCTCCGAGGTCGCGCACCCCGCACCCAGTGAGGACCCCCCGAGTCAGCCCGCACAGCTGCCTTCTAAACCCAGTGTCCCGCCTGTTGCGCATAAGAGCGTTAATCTGATTGAAGTATCCCTTTCAGATTTGAAACCCCATGAAAAGGCTGATGTATCTGTTGAAAAGTATGATGCAGAAAGTGATAAAGAACAAGTTGATGAGGACCAGAAAGTATGCTGTGGATTCTTTTTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008153:ENSBTAT00000010723:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.208 A=NA C2=0.939
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACGTGGCCCAAGGAGAAAAG
R:
GCTCTCGTTGGAGTTCAGCTC
Band lengths:
301-547
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development