RnoINT0028777 @ rn6
Intron Retention
Gene
ENSRNOG00000008741 | Camsap2
Description
calmodulin regulated spectrin-associated protein family, member 2 [Source:RGD Symbol;Acc:1310950]
Coordinates
chr13:53157937-53160511:-
Coord C1 exon
chr13:53160442-53160511
Coord A exon
chr13:53160125-53160441
Coord C2 exon
chr13:53157937-53160124
Length
317 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
3' ss Seq
TGTCTTCACATCTTTTTTAGAAC
3' ss Score
9.87
Exon sequences
Seq C1 exon
GAGGAATTAGAAGGTCTTCATCTATGTCTTATGTTGATGGCTTCATAGGAACATGGCCTAAAGAGAAAAG
Seq A exon
GTAAAAACAGTTATCTTGGTGTGGTCACATTACCAAAAAATGCCAGTTTTATCTCACTCTGCCTTTTTGTTGTAGTTAGTCAACTCGCCAAAGCACAATTTCAGTTAGGACCTAACTCTAAAAGGGCAGCACAGGGGATTAATAGAGGTCGAAGGGGGTAAACCAAAGGGTGCTGGAGCAGCCCAGTCCACCATGAGGTCAGCAAGCTTCGAGAGGCGAAGGAAGAACATAGACTTCCAAACAACTGCTCAATGGTATTTTTAAAATTGTTTATTTCCTGTAATTTCTTAAATATTTTGTCTTCACATCTTTTTTAG
Seq C2 exon
AACATCTGTACATGGCGTTTCATTTGATATTTCTTTCGATAAAGAAGACAATGCCCAGAGCTCCACTCCAAACCGAGGAATCATCCGCTCTGTTAGTAATGAGGGGCTCAACAACAGTCGGGCATCCAAACACATTAGGAAAAATCTGTCCTTCAAGCCAGTGAATGGAGGAGAAGAGGAAAGCATTGAAGAAGAACTTCATGTCGACCCTCATGGGGACCTCAAATCTTACATGCCTCTCAGCACAAATGAACTGAACTCTAATGAGAATACTCACCACAAGCTCCCAAACGGGGCTTTACAAAATAGAGTGCTTCTAGATGAGTTTGGGAATCAGATTGAAACTCCGAGCATTGAAGAAGCATTACAGATAATCCATGATACTGAAAAACCTCCTCATACAGCGCGGCCAGATCAGATTGCTAATGGCTTCTTTCTTCACGGTCAGGATCTGAGTCTCCTGAATTCAAATATCAAGCTAAGCCAGTCCAGTCCTGATAACATAACTGACCCAAAAGGCGCCTTGAGTCCCATAACTGACACTACAGAAGTCGACACTGGAATTCACGTTCCTTCAGAAGACATTCCCGAAACCATGGACGAGGACTCTTCCTTGAGAGATTATACTGTTAGCTTAGACTCTGACATGGATGATGCGTCTAAATTTCTTCAGGACTATGATATAAGAGCCAGCAACCCCAGAGAGGCCCTGAGTCCCTGCCCAAGTACCATCAGCACCAAGTCTCAGCCGGGGAGCAGCGCCTCCTCCAGCTCTGGGGTGAAAATGACCAGCTTCGCTGAGCAGAAGTTCAGGAAGCTGAATCATACTGATGGGAAGAGTAGTGGGAGCAGTTCTCAGAAAACTACCCCGGAAGGCTCAGAGCTGAATATTCCTCACATGGTTTCTTGGGCTCAAATTCCAGAAGAATCGGGTGTTGCCCAAGGCCGGGACACTACACAGCTGTTGGCGTCTGAAATGGTGCATCTTAGGATGAGGCTAGAGGAAAAGAGACGTGCTATAGAAGCCCAGAAAAAGAAAATGGAAGCTGCTTTTACCAAACAGAGGCAGAAAATGGGAAGGACAGCGTTCCTAACTGTTGTGAAAAAGAAAGGGGATGGGATTTCTCCTCTCCGAGAGGAAGCAGCAGGTGCAGAAGACGAGAAAGTATATACTGACCGAGCCAAAGAGAAGGAGTCACAGAAAATGGACGGGCAGAGGAGCAAGTCCTTAGCAGACATAAAAGAAAGCATGGAGAACCCTCAGGGCAAATGGCTAAAGTCCCCAAGCACGCCTGTTGATCCCGAGAAGCAGTGGAACCTGACAAGTCCCTCAGAGGAGACTTTAAATGAGGGAGAACTTTTAGAGTACACAAAGTCCATCGAAAAGCTGAATTCATCCCTGCACTTTCTACAACAGGAAATGCAGCGCTTGTCCCTTCAGCAGGAGATGTTAATGCAGATGAGAGAGCAGCAGTCTTGGGTGATCTCACCTCCGCAGCCCTCTCCACAGAAGCAGATCCGCGATTTTAAACCTAGACAGGCAGGCCTGTCGTCAGCTGCTGCACCGTTCTCAGCAGACTCCCCACGCCCCACTCATCCGTCTCCGCAGTCTTCTACCAGGAAGAGTGCATCTTTTTCTGTTAAAAATCAAAGGACTCCAAGGCCAAATGAATTAAAAATAACTCCTCTGAATCGAACCTTGACACCTCCTCGGTCTGTGGATAGTCTTCCTCGGCTAAGGAGGTTTTCCCCGAGCCAGGTTCCCATTCAGACACGGTCGTTCGTATGTTTTGGTGATGATGGAGAGCCCCAAAAAGAGCCCAAACCAAAAGAGGAGATTAAAAAGGAGCCTTCAGAGTGCAAAGGGACTTTGGAATCTTGTGACCATAATCCTGGGGAGAAGGAGGTTAAACCTCTTGAATCAACAGTGTCTGAAGTGTTGTCACAGCCCATCACAGAGACTGTGTGTGTGACACCAAATGAGGACCAACTGAATCAACCCACAGATCCTCCGCCTAAGCCCGTTTTCCCACCTACTGCTCCTAAAAATGTCAATCTGATTGAAGTTTCTCTGTCAGATTTAAAACCCCCTGAAAAGGCTGATGTGTCTGTTGAAAAGTTTGATGGAGAGAGTGACAAGGAACAGTTTGATGATGACCAGAAAGTATGCTGTGGCTTCTTTTTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008741:ENSRNOT00000060410:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.125 A=NA C2=0.889
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCTTCATAGGAACATGGCC
R:
GCACTCTATTTTGTAAAGCCCCG
Band lengths:
347-664
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]