DreINT0040931 @ danRer10
Intron Retention
Gene
ENSDARG00000062173 | camsap2a
Description
calmodulin regulated spectrin-associated protein family, member 2a [Source:ZFIN;Acc:ZDB-GENE-030131-3016]
Coordinates
chr22:22327232-22329420:-
Coord C1 exon
chr22:22329351-22329420
Coord A exon
chr22:22329261-22329350
Coord C2 exon
chr22:22327232-22329260
Length
90 bp
Sequences
Splice sites
5' ss Seq
GAAGTAAGT
5' ss Score
9.82
3' ss Seq
ATAATATCTTATTTCTTTAGATC
3' ss Score
9.04
Exon sequences
Seq C1 exon
GTGAGATCAAGAGATCAACCTCAATGTCATTTGTGGAGAGCTTCATGGGCACCTGGCCCAAGGAGAAGAA
Seq A exon
GTAAGTTTTAGTGCATCTCCTTATTAACACTTAAATGCACAGACTTTTAATTTACATGCCATTAAAAACCATAATATCTTATTTCTTTAG
Seq C2 exon
ATCTCCTGCTCAGGGAGTGTCCTTTGAAATCCCATTTGATGAAGACAGTAACAACAAAACAACTACTGGCCGAGGGATGACTCGGTCTGTCAGCACTGAAGGGTTTGGTTTCAAGATGCCCCATGGAACCAGAGGCATAAAGAGAAACCTGTCCTTTCAGCCTGTCAATGGCAAGAACATGGGCATTGAGGAGGAAGGCTGTCCTGACACCCTGTCAGAAAATCATAACAGCCGTCTAAATGGCTCAGGGCCACCTAGCATTGAAGAGGCCCTTGAGATCATCCACAACTCAGAGAAAAAATCACAGAGCCCCAGGGCCCATTTGCCCAGTGAAGGCTTCTTTCTTCACCTCCAGAGTAAAAGTGAATTTAACCCCAAAGCAAAGGATAGTCAGCTAGATTCAGTATCAGAATCATCCAAAGGGGTCGCTAGCACGTCCACCACTGAAGTAGACACTGGCATTCATGTGCGGACAGAGGACATCCAAGAGACACTCGACGAGGACTCATCCCTAAGGGATTGTACTGTCAGCATGGAGTTTGACATGGATCAAGACTTTGAGGCGAGAGCTTCTCGTAGCCAGGGCTCTACAAGCCCATGTCCCAGCAGCCTTAGTGCCAAGTCCCCTGCAGGAAGTATCCCAACTCCTGCTTTTACACCTGGGATTAAGTTGACCAGCTTTGCTGAGCAGAAATTACGCAAACTGAATCCGAACACAGAAACCAAAAGTGCTCCTTTCCAAGGCACAACACCAGATGGGTCAGATCTCGCCATTCCTCACTCCGTCTCTTGGGCTCCTTCTCCTGAAATCAGCCCTGCGCATCAACCGTCCAAGGACCCAGCTCAGGCCATGGCTGCAGAAATGGTGCAGCTGCGCATGAGACTGGAAGAGAAGCGTCGAGCCATTGAGGCCCAAAAGAAGAAAGTGGAGGCAGCCTTTACCCGACACCGTCAAAAGATGGGCCGCAGTGCTTTCCTCACAGTTGTCAAGAGGAAAGGAGTAGATGGAGCGTCACCATTTCAAGAGGACACTCCCACCTCAGAGGAGAGCAAAACACCAGTGGGGACACCCCAACCCGTCAAGTCTCCGCTGAAGTCTGCTGGTGAGGACGGCACATCTGAGGCAGACCTGATGGAATACACACGCTCCATTGAGAAGCTCAATGCTTCTCTAAGCTTCCTGCAGACTGAGATGCAGCGACTGGCCCAACAGCAGGAGGTAATCATGCAGATGCGGGAGCAACAAGCTTGGGTTGTGTCACCACATCAGCCTTCACCACAAAAGCAGGTACGAGAGCTCAGAGGGAGTGGGGCGCGCTCTTCTGGGTCTCCCTCACCTGCAGATTCTCCTAGAGCCACACACCGTTCCCCTACTAATCTAAAGAGGAAGTCTGCCTCTTTCCACTCCAAGACACCAAGAACACCAAGACCCAGTGAGCTAAAGATTGCTCCCTTTAATAGAGTTTTGACCGTCCCACAGTCAGTAGACAGCATACCACGCCTAAGAAGATTCTCCCCATCTCAGCCCATGTCCTGCTCATTTTCATATATGGGAAACGAGAAGAAACCATTATCAACAGCTGACAAAGACATTGAACAAGGTCTTGAGGCATTGTCAATTGAATGTTCTTCTGATACTATCACCTCCCCAACCAAAGAAACCCAACAGGCTGTAACTGATGACACTGACCTGCATGCTAAAAAGGCAGAAGATGTAGAAGAGGAGAGCAGGAAGGACATCAAGCAAACAGAAAAAAGGGAAAAGCTAAAGAAGCCAAAAACTGACATTAAGCCTGCAGTAGAATCTACCGTTTCTGAGGTTTTGTCGCAGATTGTAATGGAGACCGTTATTGTCACTCCCACAGAGCCATTTGACATTGCCCATCAGACCAATAAAAATCTGATTGAGGTCCCACTTTCTGTTTTAAAACCACTGGAAGGAAAGGCATTAGAAGAGGAAGTGGAGAAGGAGGCCTCTGGGGAAAATCAGGATGATGATCAGAAAGCGTGCTGTGGATTCTTCTTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000062173:ENSDART00000142947:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.281 A=NA C2=0.901
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTGTGGAGAGCTTCATGGGC
R:
CCATGGGGCATCTTGAAACCA
Band lengths:
167-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]