MmuINT0028492 @ mm9
Intron Retention
Gene
ENSMUSG00000041570 | Camsap1l1
Description
calmodulin regulated spectrin-associated protein family, member 2 [Source:MGI Symbol;Acc:MGI:1922434]
Coordinates
chr1:138176883-138179458:-
Coord C1 exon
chr1:138179389-138179458
Coord A exon
chr1:138179077-138179388
Coord C2 exon
chr1:138176883-138179076
Length
312 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
TGTCTTCCCGTCTTTTTCAGAAC
3' ss Score
12.9
Exon sequences
Seq C1 exon
GAGGAATTAGAAGGTCTTCATCTATGTCTTATGTTGATGGCTTCATAGGAACGTGGCCTAAAGAGAAAAG
Seq A exon
GTAAGAACGAAGTTATTCTTGGTATAGCCACGTTACCAAAAATGCCAGCTTCATCTCCTTCTGCTTTGTTGCTATAATTAGTCAGCTTGTCCAAGCATGATTTCAGCTAGGACCTAACTTTGAAAAGGGCAGCATGGAGGTCACAGAGGTGAGAGGGATGAACTGAAAGGAGATGAAGCAGCCCGGTTCACCGTGGGGTCAGCAGGCCGTGAACAGTGGAGAAAGGACAGACTTCCAAACTGCTCGATGCTATGTTTACAGTCGTTTCTTTCCTGCAGATTCTTAAACGTTTTGTCTTCCCGTCTTTTTCAG
Seq C2 exon
AACATCAGTGCATGGCGTTTCATTCGACATTTCTTTTGATAAAGAAGACAGTGCGCAGAGCTCCACTCCAAACCGGGGAATCATCCGCTCTGTTAGCAATGAAGGGCTCACTCTCAACAACAGCCGTGCATCCAAGCACATTAGGAAAAATCTGTCCTTCAAGCCAGTGAACGGAGAAGAGGAGGAGAGCATTGAGGAAGAGCTTCATGTCGACCCTCATGGTGACCTCCAATCACCCATGCCTCTCAACACGAATGAACTGAACTCTAATGAGAGTACTCACTACAAGCTTCCAAATGGGGCTTTACAAAACAGAGTGCTTCTAGACGAGTTCGGGAATCAGATAGAAACGCCAAGCATTGAAGAAGCGTTACAGATAATCCACGATACTGAAAGACCTCCTCATACGCCACGGCCAGATCAGATCGCTAATGGCTTCTTTCTTCATGGTCAAGATCTAAGTATCCTGAATTCAAATATCAAGCTAAACCAGTCCAGTCCTGATAACTTAACTGACACAAAAGGTGCCTTGAGTCCCATAACAGACACTACAGAAGTCGACACTGGAATTCACGTTCCTTCAGAAGACATTCCGGAGACCATGGACGAAGACTCCTCCTTGAGAGATTATACTGTTAGCTTAGACTCCGACATGGATGATGCATCTAAGCTTCTTCAGGACTATGACCTAAGAGCCAGCAACCCCAGGGAAGCCCTGAGTCCTTGCCCAAGCACCATCAGCACCAAGTCTCAGCCCGGGAGCAGTGCCTCGTCTAGCTCTGGGGTGAAGATGACCAGCTTTGCTGAGCAGAAGTTCAGGAAGCTGAATCACACTGATGGGAAAAGTAGCGGGAGCAGTTCACAGAAAACCACACCAGAAGGCTCAGAACTGAATATTCCTCACGTGGTGTCTTGGGCTCAAATTCCAGAGGAAGCGGGTGTTGCCCCAGGTCGGGACACGACACAGCTGTTGGCTTCTGAGATGGTGCACCTTAGGATGAGGCTGGAGGAAAAGAGACGTGCGATAGAAGCCCAGAAGAAGAAGATGGAAGCCGCTTTTACCAAACAGAGGCAGAAAATGGGAAGGACAGCGTTCCTGACTGTAGTGAAGAAGAAAGGGGAAGGGATTTCCCCTCTCCGAGAGGAAGCAGCAGGTGCAGAAGACGAGAAAGTATATACGGACCGAGCAAAGGAAAGGGAGTCACAGAAAATGGACGGACAGAGGAGCAAGTCCTTGGCAGACATAAAAGAGAGCATGGAGACCCCTCCAGGCAGATGGCTGAAGTCGCCAACCACGCCTGTTGATCCTGAGAGGCAGTGGAACCTGACAAGCCCTTCAGAAGAGACTTTAAATGAAGGAGAAATCTTAGAGTATACAAAGTCGATTGAAAAGCTGAATTCATCCTTGCACTTTCTACAACAAGAAATGCAGCGCTTGTCCCTTCAGCAGGAGATGTTAATGCAGATGAGAGAGCAGCAGGCCTGGGTGATTTCACCTCCGCAACCCTCTCCACAGAAGCAGATCCGCGATTTTAAACCTAGACAGGCAGGCCTGTCATCAGCTGCTGCACCGTTCTCTTCAGACTCCCCACGCCCAACTCACCCATCCCCACAGTCTTCCACCAGGAAGAGCGCGTCTTTTTCTGTTAAAAATCAAAGGACTCCAAGGCCAAATGAATTAAAAATAACTCCTTTGAACCGAACCTTGACACCTCCTCGGTCTGTGGATAGCCTTCCTCGGCTAAGGAGGTTTTCCCCAAGTCAGGTTCCCATTCAGACACGGTCATTTGTATGCTTTGGTGATGATGGAGAGCCCCAAAAAGAGCCCAAACAGAAAGAGGAGATTAAAAAGGAGCCCTCAGAGTGCAAAGGGACTTTGGGACCTTGTGACCATAATCCTGGGGAGAAGGAGATTAAACCTGTTGAATCAACAGTGTCTGAGGTGTTGTCACAGCCTATCACAGAGACTGTGTGTGTGACACCAAATGAGGACCAACTGAGCCAGCCCACAGAGCCACCTCCTAAACCTGTTTTCCCACCTACTGCTCCTAAAAATGTCAATCTGATTGAAGTTTCTCTGTCCGATTTAAAACCCCCTGAAAAGGCTGATGTATCTGTTGAGAAGTTGGATGGAGAGAGTGATAAGGAACAGTTTGACGATGACCAGAAAGTATGCTGTGGCTTCTTCTTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000041570-Camsap1l1:NM_001081360:12
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.167 A=NA C2=0.898
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGCTTCATAGGAACGTGGC
R:
TGTAAAGCCCCATTTGGAAGCT
Band lengths:
343-655
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: