MmuINT0028492 @ mm10
Intron Retention
Gene
ENSMUSG00000041570 | Camsap2
Description
calmodulin regulated spectrin-associated protein family, member 2 [Source:MGI Symbol;Acc:MGI:1922434]
Coordinates
chr1:136280306-136282881:-
Coord C1 exon
chr1:136282812-136282881
Coord A exon
chr1:136282500-136282811
Coord C2 exon
chr1:136280306-136282499
Length
312 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
TGTCTTCCCGTCTTTTTCAGAAC
3' ss Score
12.9
Exon sequences
Seq C1 exon
GAGGAATTAGAAGGTCTTCATCTATGTCTTATGTTGATGGCTTCATAGGAACGTGGCCTAAAGAGAAAAG
Seq A exon
GTAAGAACGAAGTTATTCTTGGTATAGCCACGTTACCAAAAATGCCAGCTTCATCTCCTTCTGCTTTGTTGCTATAATTAGTCAGCTTGTCCAAGCATGATTTCAGCTAGGACCTAACTTTGAAAAGGGCAGCATGGAGGTCACAGAGGTGAGAGGGATGAACTGAAAGGAGATGAAGCAGCCCGGTTCACCGTGGGGTCAGCAGGCCGTGAACAGTGGAGAAAGGACAGACTTCCAAACTGCTCGATGCTATGTTTACAGTCGTTTCTTTCCTGCAGATTCTTAAACGTTTTGTCTTCCCGTCTTTTTCAG
Seq C2 exon
AACATCAGTGCATGGCGTTTCATTCGACATTTCTTTTGATAAAGAAGACAGTGCGCAGAGCTCCACTCCAAACCGGGGAATCATCCGCTCTGTTAGCAATGAAGGGCTCACTCTCAACAACAGCCGTGCATCCAAGCACATTAGGAAAAATCTGTCCTTCAAGCCAGTGAACGGAGAAGAGGAGGAGAGCATTGAGGAAGAGCTTCATGTCGACCCTCATGGTGACCTCCAATCACCCATGCCTCTCAACACGAATGAACTGAACTCTAATGAGAGTACTCACTACAAGCTTCCAAATGGGGCTTTACAAAACAGAGTGCTTCTAGACGAGTTCGGGAATCAGATAGAAACGCCAAGCATTGAAGAAGCGTTACAGATAATCCACGATACTGAAAGACCTCCTCATACGCCACGGCCAGATCAGATCGCTAATGGCTTCTTTCTTCATGGTCAAGATCTAAGTATCCTGAATTCAAATATCAAGCTAAACCAGTCCAGTCCTGATAACTTAACTGACACAAAAGGTGCCTTGAGTCCCATAACAGACACTACAGAAGTCGACACTGGAATTCACGTTCCTTCAGAAGACATTCCGGAGACCATGGACGAAGACTCCTCCTTGAGAGATTATACTGTTAGCTTAGACTCCGACATGGATGATGCATCTAAGCTTCTTCAGGACTATGACCTAAGAGCCAGCAACCCCAGGGAAGCCCTGAGTCCTTGCCCAAGCACCATCAGCACCAAGTCTCAGCCCGGGAGCAGTGCCTCGTCTAGCTCTGGGGTGAAGATGACCAGCTTTGCTGAGCAGAAGTTCAGGAAGCTGAATCACACTGATGGGAAAAGTAGCGGGAGCAGTTCACAGAAAACCACACCAGAAGGCTCAGAACTGAATATTCCTCACGTGGTGTCTTGGGCTCAAATTCCAGAGGAAGCGGGTGTTGCCCCAGGTCGGGACACGACACAGCTGTTGGCTTCTGAGATGGTGCACCTTAGGATGAGGCTGGAGGAAAAGAGACGTGCGATAGAAGCCCAGAAGAAGAAGATGGAAGCCGCTTTTACCAAACAGAGGCAGAAAATGGGAAGGACAGCGTTCCTGACTGTAGTGAAGAAGAAAGGGGAAGGGATTTCCCCTCTCCGAGAGGAAGCAGCAGGTGCAGAAGACGAGAAAGTATATACGGACCGAGCAAAGGAAAGGGAGTCACAGAAAATGGACGGACAGAGGAGCAAGTCCTTGGCAGACATAAAAGAGAGCATGGAGACCCCTCCAGGCAGATGGCTGAAGTCGCCAACCACGCCTGTTGATCCTGAGAGGCAGTGGAACCTGACAAGCCCTTCAGAAGAGACTTTAAATGAAGGAGAAATCTTAGAGTATACAAAGTCGATTGAAAAGCTGAATTCATCCTTGCACTTTCTACAACAAGAAATGCAGCGCTTGTCCCTTCAGCAGGAGATGTTAATGCAGATGAGAGAGCAGCAGGCCTGGGTGATTTCACCTCCGCAACCCTCTCCACAGAAGCAGATCCGCGATTTTAAACCTAGACAGGCAGGCCTGTCATCAGCTGCTGCACCGTTCTCTTCAGACTCCCCACGCCCAACTCACCCATCCCCACAGTCTTCCACCAGGAAGAGCGCGTCTTTTTCTGTTAAAAATCAAAGGACTCCAAGGCCAAATGAATTAAAAATAACTCCTTTGAACCGAACCTTGACACCTCCTCGGTCTGTGGATAGCCTTCCTCGGCTAAGGAGGTTTTCCCCAAGTCAGGTTCCCATTCAGACACGGTCATTTGTATGCTTTGGTGATGATGGAGAGCCCCAAAAAGAGCCCAAACAGAAAGAGGAGATTAAAAAGGAGCCCTCAGAGTGCAAAGGGACTTTGGGACCTTGTGACCATAATCCTGGGGAGAAGGAGATTAAACCTGTTGAATCAACAGTGTCTGAGGTGTTGTCACAGCCTATCACAGAGACTGTGTGTGTGACACCAAATGAGGACCAACTGAGCCAGCCCACAGAGCCACCTCCTAAACCTGTTTTCCCACCTACTGCTCCTAAAAATGTCAATCTGATTGAAGTTTCTCTGTCCGATTTAAAACCCCCTGAAAAGGCTGATGTATCTGTTGAGAAGTTGGATGGAGAGAGTGATAAGGAACAGTTTGACGATGACCAGAAAGTATGCTGTGGCTTCTTCTTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000041570:ENSMUST00000192001:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.167 A=NA C2=0.899
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGCTTCATAGGAACGTGGC
R:
TGTAAAGCCCCATTTGGAAGCT
Band lengths:
343-655
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types