GgaINT0036850 @ galGal3
Intron Retention
Gene
ENSGALG00000002145 | CAMSAP2
Description
NA
Coordinates
chr8:1383493-1386138:-
Coord C1 exon
chr8:1386069-1386138
Coord A exon
chr8:1385345-1386068
Coord C2 exon
chr8:1383493-1385344
Length
724 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
3' ss Seq
TTCCTTTTTTTCTCTGTAAGGTC
3' ss Score
8.69
Exon sequences
Seq C1 exon
GAGTCATCAGAAGGTCCACATCAATGTCTTACGTAGATGGCTATGTAGGGACATGGCCAAAAGAAAAGAG
Seq A exon
GTAAGTAGTCTTTACCATAAGTTGATTAAAAAATGATTGTGTATTGTAAATTTTCCATTGTGATTGGGATTTTCAAAATCTGGTGATTAGTTTACAAAAGTAGAAGGCAAAGAGAAAACTGTGTCATGGATTAAGAACTCAGTAATAGGAAACAACCTTAAGAAATAACATTTTTTCAATATATTAGCATTAAATATGTTTACATTTACCTACTACAATTTAGCCAAATGAGTTGAGTCACATTGCTAATGAGTTCAGTATTATCAAAACCTAGTATCAAAAATGGTATTAATTCCTATATAGTAAAAACGATCAGGCTGGAGATGTCTCCTTTTTCTGTTAGACTACTCAAACTCTGAATGTATAGGACGTAAGGTCGTAAGGTAAAGGTAAAATGGTTAAGAGTTATATTAAAGGGTTATTCTGCAAGTCTGAGTTGTCTTTTCACACCTTGATTCTGATGTAGACTGGCAATTTTTATATTCTTGAAGTGCATCAAACTTACTCCAAGCTACTAAAGAGCATTGGTTGGCTCTAAAGAAAGTGTTATTATATTGTATGTTGTGCATTTTTAATGTATCCTATTTGGAAATGAAGCTGGTCGAAATACAGTACATGTAATAGTCCATTTTATACTACAGTCTCCAGATAACTTTTAGAACAAATATGAATATTTTGTTATTAATCATGAGTTGCTCAGTTATTTCCTTTTTTTCTCTGTAAG
Seq C2 exon
GTCATCGTTACATGGAGTTTCATTTGACATTTCTTTTGACAAAGAAAAAAGTATTCCAGTATCTTCTCCAAACAGAGGTATTACTAGATCTGTAAGCAATGAAGGCCTTACGTTAAACAACAACCGTGTGCCCAAACATATTAGAAAAAATCTGTCCTTCAGACCAGTAAATGGAGAAGAGGAAAATGAAGATATTGAAGAGGAAAAGGACACAGTAGCTCATACAGACACAAAGGTCCGTCGTTCTTTTACCACAAATCAAAGAAATGCCAACGAGAGCAGTCACTGCCGGTTTCCAAACGGGGCTTTGCAAAACAGAGCCGTTCTGGATGATTTTGGCAATCAGATTGAGACACCAACAATTGAAGAGGCTTTGCAAATAATTCATGACACCGAAAAATCTCCCAGAGTTATCCCGACAGACCAAATTACAAATGGGTTCTTTCTTCACAATCAGGAAATGAGCATCTTGAATTCAAACATAAAACCAAATCAGTCTACCCCTGATCTGATCACAGACACAAAAGGTGCTTTAAGTCCTGTGACTGACAACACAGAAGTCGATACTGGAATACACGTTCCTTCGGAAGATATTCCGGAGACTATGGATGAGGATTCTTCTTTAAGAGATTATACTGTAAGCATGGACTCTGACATGGAAGAACCATCTAAATTTCTTCAGGATTATGACATAAGAGCTAGCAATCACAGAGATCAATTAAGTCCCTGTCCTAGCTCAGTAAGTACCAAGTCCCAGGCTGGCAGCAGTGCTTCTTCAAGTTCTGGGGTTAAAATGACTAGTTTTGCAGAGCAGAAATTCAGAAAGTTGAATCATACAGATAGTAGAAGCAGTGGCAGCAGTTCTCAGAAAACCACACCGGAAGGTTCTGAGCTGAATATTCCTCATGTGGTTGCTTGGACTCATATTCCTGAGGAGACATCTGTTCCCCAAGGAAGAGACACTACGCAGCTACTGGCTTCAGAGCTGGTACATCTTAGGATGAAGCTGGAGGAAAAGAGACGAGCAATTGAAGCCCAGAAGAAGAAAGTTGAAGCTGCTTTCACTAAGCAGCGGCAGAAAATGGGAAGAACAGCATTTCTTAATATTGTGAAAAAGAAAGGCGATGGAGTATCACCTCTCCGAGAAGAAGCAGCAGGAGCTGAAGATGAGAAGATATTCACAGACAGTAATAGACTGAAAGAAAGAGAAACTCAAAAAACAGATGAACAAACTAATAAGGCTTCAGAATCAATAAAAGAAAACCCTGAAAATGCTCACAACAAATGGTCAAAGTCTCCTGCTACTCCTATGGATGCTGAAAAGCAGTGGAATTTAGCTAGCCCCTCCGAAGAAAATTTCAATGAAGGAGATATCTTGGAATATACCAAATCTATTGAAAAACTAAATTCTTCCTTACACTTTCTACAACAAGAAATGCAACGTCTGTCCCTTCAACAGGAGATGTTGATGCAGATGAGAGAGCAGCAAGCTTGGGTTATTTCTCCTCCTCAGCCTTCTCCTCAGAAGCAACTTCGGGAGTTTAAGGCTTCATCGAGGCAAATGGGAGCTCCGTCTCCCATCGCACCTTTCTCACAGGAATCTCCTCGCTCCACACATCAATCTCCACAGTCATCCAACAGGAAGAATGCATCTTTTCACATAAAAATGCAAAGGACTCCCAGGCCAAATGAATTGAAAATAACACCTCTAAATCGTACCTTGACTGCCCCAAGGTCTGTGGATAGTCTTCCTCGCTTGAGAAGATTTTCCCCAAGTCAGGTTCCCATTCAGACGAGATCATTTGTTTGCTTTGGAGATGATGGTGAACATCCAGATGAACCTCAGCTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002145:ENSGALT00000003364:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.042 A=NA C2=0.922
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTATGTAGGGACATGGCCA
R:
TGTTTTGCAAAGCCCCGTTTG
Band lengths:
349-1073
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]