BtaINT0031118 @ bosTau6
Intron Retention
Gene
ENSBTAG00000011356 | CAMSAP3
Description
calmodulin regulated spectrin-associated protein family, member 3 [Source:HGNC Symbol;Acc:HGNC:29307]
Coordinates
chr7:17681266-17682364:+
Coord C1 exon
chr7:17681266-17681404
Coord A exon
chr7:17681405-17682224
Coord C2 exon
chr7:17682225-17682364
Length
820 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
3' ss Seq
CAGGCATCCTGTCCCGACAGAGG
3' ss Score
5.79
Exon sequences
Seq C1 exon
ATTCGATATCGCAAGGACCGTGCGGTGGCCCGACGTGCCCCCTGCTTTCCGACGGTGACCAGCCTCCAGGACCTGGCAAGTGGGGCTGCGCTGGCCGCCACAATCCACTGCTACTGTCCCCAGCTCTTGCGACTTGAGG
Seq A exon
GTGAGTGAATGGGTCTGAGCCAGATCCTGTCCCGACGAGCCTGGCACCCAGGCCTTGGCTCCTGTCCCCAGAGTATCACAGAGACTGTTAAGTGTAGCTCCCAGGATTGGCAGACCTGAGTTTGAACATCTCTCTCCTATTAATGAGCTGTGTGACCTTGCCCAAGTGTCTAAACGTCTCTGTGCTGCCTATAATTCAGTGTGTGTTAGTTGCTCAATCGTGTCTGACACTTTGTGACCCCACTGTAGACTGCCAGGCTCCTCTGCCCATGGGATTCTCCAGGCAAGAATACTGGAGTGGGTTGTCATGTCTTCCTCCTGGGGATCTTGCCAACCCAGGGATCGAACCCAGGTCTCCTGCATTGCAGGAAGATTCTTTACCATCTGAGCCATACTGTGTGATTCCATAATTCAGTCCTGCAGCAAATGTGAGTAGAGTAGAAACTGTGTGCCAGATCCTATTGTAGGCACCAAGAGATCCAACCAAAACAATATGGACCTGCCCCTGGCCTCAGGCGGCTCACATCCTAGTTGAGAGAGAATGAACCATAAGTTCATCTAGAGGAATATTCTGGATGTTAAGTACTTTGTCAGGTGCTGGGTAGTCAGAAGCCATTTGAGCTGAGTTCTCGGGGGACTAGCATTCCAGGCGGTGGGGACAGTAGATGCAAAGACCTGAGGGACAGCCAGCCTGTCATGACACCCACCTTATGAAGGGGGCCCGGCTCAGCTCATCAGTCGAAGGTGTCCGTGTATATTGTGTGCTGGGACCCCGTCCTCCTTCCTGGAGAGCCAGGGACCCAGGCATCCTGTCCCGACAG
Seq C2 exon
AGGTATGCCTCAAGGACCCCATGTCTGTGGCGGACAGCCTGTACAACCTCCAGCTGGTGCAGGATTTCTGTGCCTCCCGCCTCCCTCGGGGCTGCCCGCTGTCCTTGGAGGACCTTCTCTATGTCCCACCGCCCCTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011356:ENSBTAT00000015094:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF119713=CAMSAP_CH=PU(48.2=85.1)
A:
NA
C2:
PF119713=CAMSAP_CH=PD(50.6=89.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCGATATCGCAAGGACCGTG
R:
CTTGAGGGGCGGTGGGAC
Band lengths:
278-1098
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]