DreINT0005692 @ danRer10
Intron Retention
Gene
ENSDARG00000059475 | CAMSAP3 (1 of 2)
Description
calmodulin regulated spectrin-associated protein family, member 3 [Source:HGNC Symbol;Acc:HGNC:29307]
Coordinates
chr3:53185162-53185527:+
Coord C1 exon
chr3:53185162-53185300
Coord A exon
chr3:53185301-53185387
Coord C2 exon
chr3:53185388-53185527
Length
87 bp
Sequences
Splice sites
5' ss Seq
AAGGTACGC
5' ss Score
10.4
3' ss Seq
TTGTTTATATGTGTTTTCAGATG
3' ss Score
10.35
Exon sequences
Seq C1 exon
ATCCGGTACAGGAAGGACAGGATGCAGTCTAAGCTCAAACCTTGTTTTCCTGTGGTAAACGAAGTGAAGGATCTCTCAAACGGATGTGCCATTGCTGCTGTTATTCACTATTACTGTCCTAGTCTACTGAGATTAGAAG
Seq A exon
GTACGCTCGAATCTCAGATCTTCATCTGTTAGCTTATAGATGAAGAAGAAGTACATTTAAGGTTTTTTTGTTTATATGTGTTTTCAG
Seq C2 exon
ATGCATGTATGAAGGACTCCATGACTGTGGCTGACAGCTTGTACAACCTACAGCTGATTCGAGAGTTCTGTGACAGTTGCCTGAAGAGCTGCTGCCCTCTAGTGTTGGAAGATTTACTCTACAGCCCCTCAGAATTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000059475:ENSDART00000082715:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.021 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0030726=CH=FE(31.5=100)
A:
NA
C2:
PF0030726=CH=FE(31.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGGTACAGGAAGGACAGGAT
R:
AGCCACAGTCATGGAGTCCTT
Band lengths:
169-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]