RnoINT0028805 @ rn6
Intron Retention
Gene
ENSRNOG00000000986 | Camsap3
Description
calmodulin regulated spectrin-associated protein family, member 3 [Source:RGD Symbol;Acc:1597412]
Coordinates
chr12:2148297-2150172:+
Coord C1 exon
chr12:2148297-2148435
Coord A exon
chr12:2148436-2150032
Coord C2 exon
chr12:2150033-2150172
Length
1597 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
3' ss Seq
CATGTATCCTGTCCCCACAGAGG
3' ss Score
10.04
Exon sequences
Seq C1 exon
ATTCGATACCGCAAGGACCGTGCCATTGCCCGGAGGGCCCCCTGCTTTCCAAATGTGACTACCCTTCAGGACCTGGCCAGTGGAGCAGCACTGGCTGCCACCATCCACTGCTATTGTCCCCAGCTATTACGACTTGAGG
Seq A exon
GTGAGTAGTGGGTAAGCCAGACCTGATCCTGGGAAGGCATCTCCAGTCAGCAGGACCAGTATGATTCAGTATCGAGCTAAGGTCTTACATAGCCTAGGTCAGCCTTGACCTCGCTTTGAACCTCTCTGAGTGCTGGGATGACCACCATGCTGGTGCGAACCACCATGACTGGTTTATGTGGAGTGGGGAATGGAACCCAGTGCTCATGCTTGCTACGCAAGCACTCTACCCACTCAGCCACATCCCTGGTCCCTGAGTTCTGCTTCTAGAATCAGATCGTGCAGGTTTGGGTCCCTCTCCTCTCTGAGTTAGCTCAGTGACCATACACAAGTGTCTAAACCTCTCAGTGCGAGGTAGACTTCATGCTCACTGAAGGTGGTGGTCCACTTTAGGTATCTGGAAACAGAGGCAGACTCTTGACTTCCTAAGACAGTGTAACATTTTCATTGAAGAAAAGAAATAACAAGTTCATCTAGAAGTATCTTTTGGGTCAAATGCAGTGCCCAAGGGCAATGATTGCCTAAGAAAAGAAACTTGTTACTGTTTTGAGACAGAGTTGCTCTGTAACCCAGACTGGCCTCAAACTCCTTCTCTTCCTGCCTGGAGATTACAGGTATGTGTTACTATATATCTGCCTAGGAAAAAAAAGGTTTTTGTATTTCTGTTGTTGTTGTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTAATTGAGACAGAATCTCATGTAGCCCAAGCTGGCCTCAAATTCACTATATAGCAAAGAATATCCCTGAACTTCTTATACTCTTGCCTCTACCTTCTAAGTATTAAGATTACAGTCATGTTTATGGGGTATTGGGGATGGAACCCAGGCTTTGTATGTTATATTGCAGGCAGGCACCCTTCTAACTGACCTGTATTCCCAGTCCTTTGGAGGATGTTTTTATTTGGTTTTTGTTTTTAAGATTTATTTTAGTTTTAAAAATATGTATATACATGGGTGGTCTGTTTATGTCTGAGTACAGGTGAGTCTCAAAGAAGGTGCTGGATCCCCGGTAGCTAGTCTCATCTGATGGGGATTGGGAACTAAACTCATGTCATCTGCAAGAGCAGTATCTGCTCTTAACTGCCACGCTGTCTCTCCAGAACAAAGGATTCCCAGGAAGCTGGGAGATGGCTCAGTTGATAAGCTGCAATACCATGAAAACCAGAGTTTGTTCTTAGCATCCATGTAAAAATCTCTGTCCAGCAGCGAGTGTCTATAATCCCAGTTGCAGGAAGGTGGAGACAGGAGAATTCAGGGGACTTGCTGGCCAACTAGTAGATTCAGCAAGCACCAGTTTCCGTGAAAGATCCTACTTTGGAATCTAAGGTAGAGAGTGCATTGAGAAGGAAGACACCCACTGTTGACCTTGGTCTGCCGACATGTACACATATGTGCAGACATATACAGAGGACAAGAGAAAAAACAAAACTCTTGTGTTAAGTCTTAGTCAACGCATTGTAGTATGCATCTTACAAAACGTACAAGACTTGGCTCAAAGGAGAGCTTCCCTGGAGCACCTGACTTCTTTATCATTGAGTTGTACACCCATGTATCCTGTCCCCACAG
Seq C2 exon
AGGTGTGCCTCAAGGACCCCATGTCTGTGGCAGACAGTCTCTACAACCTCCAGCTGGTACAAGACTTCTGTGCCTCCCATCTTCCTCGGGGCTGCCCCCTATCCCTTGAAGACTTACTCTATGTCCCACCGCCCCTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000986:ENSRNOT00000001305:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.005 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF119713=CAMSAP_CH=PU(48.2=85.1)
A:
NA
C2:
PF119713=CAMSAP_CH=PD(50.6=89.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCAAGGACCGTGCCATT
R:
CTTGAGGGGCGGTGGGAC
Band lengths:
270-1867
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]