MmuINT0002337 @ mm9
Intron Retention
Gene
ENSMUSG00000044433 | 2310057J16Rik
Description
calmodulin regulated spectrin-associated protein family, member 3 [Source:MGI Symbol;Acc:MGI:1916947]
Coordinates
chr8:3600676-3602105:+
Coord C1 exon
chr8:3600676-3600814
Coord A exon
chr8:3600815-3601965
Coord C2 exon
chr8:3601966-3602105
Length
1151 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
3' ss Seq
CATATATTCTGTCCCCACAGAGG
3' ss Score
9.97
Exon sequences
Seq C1 exon
ATTCGATATCGCAAGGACCGTGCCATTGCCCGAAGGGCTCCCTGCTTTCCAAATGTGACTACCCTTCAGGACCTGGCCAGTGGGGCAGCACTGGCTGCCACCATCCACTGCTATTGTCCCCAGCTATTACGACTTGAGG
Seq A exon
GTGAGTAGTGGATAAGCCAGACCTGATCCTGGAAAGGCATCTCCAGTCTGCAAGACCAGTATGATTCAGTATTGAGCTAAGGCCTTACATAGCCTAGGTCAGCCTTGGCCTCACTTTGAACCTCTCTGAGTGCTGGGGTGACAGGTGCATACCACCATATCTGGTTTAGGCAGTGTGGGGGATGGAACCCAGTGCTCATGCATGCTAGGCAAGAACTACCAACTCAGCCACAGTGTGTGTCTGTATGTGTGTGTGTGTGTATCAAAGGATAGCCTTGAACTCCTATAATACTCTTGTCTCTACCTTCTAAGTATTGATATTTACAGTCATGTTCCCCAGGCCAAATTTATGGGATCCTGGGGATGGAACCCAGGCTTTGTATATTATATTATATTATATTATATTATATTATATTATATTATATTATGGGCAGGCACCCTTCTAACTGACCTGTATTCCCAGCCCTTCAGGAGGATGTTTTTATTTGGTTTTTATTTTTTAGATTTTTTTTTTAGTTTTAAAATATGTATGTATTGTGGGGTCTGTGCATGTGTGAGTGCAGGTGACCTTGGAGAATGCGATGGATCCCCTGTAGCTGGGCTCATCTGATGTGGTATTTGAAACTAAACTCAAGTCATCTGCAAGAGCAGTATATGCTCTTAACTGCCAAGCCATGTCTCCGAAAAAAGGATTTTGAGGAAGCTGGGAGATGGCTTAGTTGATAAGCTGCAAAAACATTATGACCTGAGTTTGGGTTCTTAGCATCTGTATAAAGTTCTCTGTACAGCAGTGAGTGCCTATAATCCCAGGGCCAGGGAGGTGGAGACAGAGAGGCTCTGGGGACTTGCTGGCCAACTAGTAGAATCAGTAAATATCAGTTTCAGTGAGAGACCCTATCTTGGAATCTAAGGTAGAGAGCACATGGGAAGGAAGATACCTACTGTTGACCTCTGGTCTGCAGACATGTACACACAGGTGCACACATATACAGAGGACAAGAAGAAAACAATTCTTGCGTTAAGTCTTAGAGGGCCAATACACTGTAGTATGCACCTTACAAAAGGTACACGACTTGGCTCAAAGGAGGGCTTCCCTGGAACTCCCATCTTCTTTTCCATTGAGTTGGAGACCCATATATTCTGTCCCCACAG
Seq C2 exon
AGGTGTGCCTCAAGGACCCCATGTCTGTGGCAGACAGTCTATACAACCTCCAGCTGGTGCAAGACTTCTGTGCCTCCCATCTTCCTCGAGGCTGCCCCCTGTCCCTTGAAGACTTGCTGTATGTCCCACCACCCCTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000044433-2310057J16Rik:NM_027171:5
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF119713=CAMSAP_CH=PU(48.2=85.1)
A:
NA
C2:
PF119713=CAMSAP_CH=PD(50.6=89.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCGATATCGCAAGGACCGTG
R:
CTTGAGGGGTGGTGGGACATA
Band lengths:
278-1429
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: