HsaINT0086977 @ hg38
Intron Retention
Gene
ENSG00000076826 | CAMSAP3
Description
calmodulin regulated spectrin associated protein family member 3 [Source:HGNC Symbol;Acc:HGNC:29307]
Coordinates
chr19:7608126-7610615:+
Coord C1 exon
chr19:7608126-7608264
Coord A exon
chr19:7608265-7610475
Coord C2 exon
chr19:7610476-7610615
Length
2211 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
3' ss Seq
CACTCCTCCTGTCCCCACAGAGG
3' ss Score
10.73
Exon sequences
Seq C1 exon
ATCCGATACCGCAAGGACCGTGTGGTGGCGCGACGTGCCCCCTGCTTCCCGACGGTGACCAGCCTCCAGGACCTGGCCAGTGGGGCCGCGCTGGCCGCCACCATCCACTGCTATTGTCCCCAGCTGCTTCGACTTGAGG
Seq A exon
GTGAGTAAATGGATGTGGAACAGATCTTGTGCCGGGGAGCTGGGCATCCTAAGTCCCAGCCCCTAGACCCTCCATCCCCAGGTCCGCGAGACCAGCAACGATGCAGTGGTCATGAGGGCAGCTTCCGGAACTGGCAGGCCTGAGTTTGTGTCTCTCTCTTCCCCAATGAGCTTTGTGACCTCACACAAGTATATAAACCTCTCTGTGCTTCCAGGAGTTCATTCCTGCAGCAGATGAAACGTATGGAGTGTGGACTGTGTGCCAGACCTTGTTTTAGGCACTGGGGATCCAGCCAGAATAGAGACACACTCCCCACTTCACAGACGGCTCTAGCTGGGAGAGAAAGATACTAAGTTTATCCAAAAGTACTTTTTTTTTTTTTTTTTTGAGACGGGAGTCTTGCTCTGTTGCCCAGGCTGGAGTGTAATGGCATGATCTCGGCTCACTGCAACCTCCACCTCCCAGGTTCAAGCCATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGACTACAGCCACACGCCACCACGCCTGGCTAATTTTTGTATTTTTAGTAGAGACGGGTTTCACCGTGTTGGCCAGGCTGGTGTCGAATTCCTGACCTCAAGTGATCTGCCTACCTTGGCCTCCCTAAGTGCTGGGATTGCAAGTGTGAACCACTGCACCCGGCCCAGAAGTACTTTTTGCATACTGGGTAGTCCTAAAGGCAATGGGTGGTCAGAAAAAGCTTTTTTTAAAAAAACTCTTTTTTCTTTTTTATTAAAAAAAAAATTATAGGGCTGGGTGTGGTGGCTCACGCCTGTAATCCCAGCAGTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCACGAGTTCAAGACCAGCCTGGCCAGGATGGTGAAACCGTCTCTACTAAAAATACAGAAATTAGCCGGGTGCGGTGGCGGGCGCCTGTAATCCCAGCTACACAGGAGGCTGAGGCAGGAGAATCGCTTGAACCCAGGAAGTGGAGGTTGCAGTGAGTCAAGACCATGCCATTGCACTCTAGCCTGGGCAACAGAGCGAGACTCCATCTCAAAAAAAAAAAAAAAAAAGTATAAAATAGAGATGGGGTCTTGCTATGTTGCCCAAGCTGGTCTTGAATCCCTGGGCTCAAACATCCTCCCACCTCAGCCTCCCCAAGTGCTAAGATTACAGGTGTGAGCCACCACACCTGGCCCGGAAAAGCTTTTTGAGCTGAGGTCTTGGGGGAGAGTGTTCTAGAAAGATGCAAAGGCCTAAGGCAATAGTCACCAACTTTTTGGCTCCAGGGACCGGTTTTGTGGAAGACAATTTTTCCACAGATGGAGGCAGGGAGGTGGTCTTGGGATAATTCAAGCACGTTAATCTTTATTATGTACTTTATATCTAATACGTTGTAACATAGAATGAAATAATTCTACAACTCATCATCATGGGGAACCAGTGGGAGCCCTGAGCTTGTTCCTGCAACTAGACGGTCCCAGCTGGGGGTGATGAGAGACAGTGACAGATCATCAGGCATTCGATTTTCATAAGGAGGGTGCAACCTAGATCCCTCACACGCCAGGTTCACAATAGGGTTCGCGCTCCTGTAAGAATCGAATGCCGCCGCTGATCTGACGGAAGCGGGGTTCGGGTGGTCCTGCAAGTGACGGGGAGCGGCTGTAAATACACTCACTGCAGCTCACCTGCTGTACGGTTCAGTTCCTGACAGGCCACGCCCCGGGGGTTAAGGACCCCCGGCCTAAGGACGGTCTATCATATAATTCACCTCGGCCGGGTACAGTGGCTCACGCCTGTAATCCCAGCACTTTGGGTGGCTGAGGCGGCCGGATCATGAAGTCAGGAGATCGAGACCATCCTGGCTAACACGGTGAAACCCCATCTCTACTAAAACCACAAAAAATTAGCCTGGTGTTGTGGCACACTCCTGTAATCCCAGCTACTCAGGAGGCTGAGGTGGGAGAATCACTTGAACCCGGGAGGCAGAGGTTGCAGTGAGCTGGGATTGCGCCACTGCACTACAGCCTGGGTGACAGAGCGAGACTCCATCTCAAAAAAAAAAAAAAAAGAATTCACCTCTCGAAGGGCACCTGGCAGAAGCTGGGCTCATAGGAGGTCTTCCGTGTGTGGGGGACTGCTGGTCCCTGGCTTCCCTGGGGCCCCATCCTCCTCCTCATAGAGTTGGGGACCCACTCCTCCTGTCCCCACAG
Seq C2 exon
AGGTGTGCTTGAAGGACCCCATGTCTGTGGCGGACAGCCTGTACAACCTCCAGCTCGTGCAGGATTTCTGTGCCTCTCGCCTTCCTCGTGGCTGCCCCCTGTCCCTTGAGGACTTGCTGTACGTCCCACCGCCACTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000076826:ENST00000160298:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF119713=CAMSAP_CH=PU(48.2=85.1)
A:
NA
C2:
PF119713=CAMSAP_CH=PD(50.6=89.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development