BtaINT0033018 @ bosTau6
Intron Retention
Gene
ENSBTAG00000001090 | CCDC173
Description
coiled-coil domain containing 173 [Source:HGNC Symbol;Acc:HGNC:25064]
Coordinates
chr2:26671363-26676252:+
Coord C1 exon
chr2:26671363-26671556
Coord A exon
chr2:26671557-26676095
Coord C2 exon
chr2:26676096-26676252
Length
4539 bp
Sequences
Splice sites
5' ss Seq
ACAGTATGT
5' ss Score
6.05
3' ss Seq
TGTTTTTTTTTTTTCTTCAGAAT
3' ss Score
11.17
Exon sequences
Seq C1 exon
TCAGGACTACTTCTTAGTAGAGTTATGAAAGAACGGGATGCACAGATTGAATTCCAAAAGAGTAAAATAAAATCAGATAAAAAATGGGAGGAACAAGTGAAACTCAATGTTGAAAAAGCTTTTAAAGAAGAACGAGAAAAAGCAGAAAAACAACGCAGAGAAAGAGTGGCTCTTGCTAAAGATCATTTAAAACA
Seq A exon
GTATGTATATATAAATTACCTTTTTTTTGTACCTTCTTTTTCTTGTAATGGATATAGCTTTTTTTTCTGATTATAAAAGTAACGTATGCTGATATACTTAATAAATAGAAAAAAATACAAAGAAAGAGGTTAAGAATCACTATTACTCCTTTGGTGGCTTAGTCGCTAAGTCATGTCTGACTCTGCAACCCCATTTACTTTAGCCTACCACGCTCCTCTGTCCATGGGGTTTTTCAGGCAAGAATACTGGAGTGGGTTGCCATTTCCTTCTCCAAGGGATCATCCCAGCCCAGGGATCGAACTTTGGTCTCCTGCATTGCAGGTGGATTACTTCCTTATCTAAAAATAATATATTAGTTACAATTGTTATAATAATGCCACAAAATCTGGTGGCATTCAACAGTAAACATTTATTTCTCATGTGTGTGTGGGTTGTTTGGGCTTGGCTGGGCAGCTTCTCTTCAAACTGTAGGACAGCTGGGTTTGCTTGTTACTGCAGTAAAGGCTCTGATCCTATTCCATGTGGATCTCATTTTGAGGTCCAGGATGAAGGGACAGCAAGCACCAGGGGAAAATTGTTTTTACGGTATTGACAGATGCAAAAGAATGAACCCAAGCTTGCAAGCACATGGCTAAACCCAAAGAAAGTCAAAGGGTAAGGAAATACACTTGGCCTACCATGAGTCTCAAGTCACATCACCATGCTGACTTCAGTGGGACAGAGCCATAGACCTACATGCAAGTGAGGAGTGAGGGAGTCCATCTTTTTGAACAATAATCTAATCTAACACAATAATTTGTTATTGTCTTGGTATGTAGCCATATAGATTTTTTTGATGTTAGTGGTAGAGAGGGTCTCATTCACTGAAGTATAATTTGTATTTAATAAAATCCACTTTTTAAAAGCATATTGCTGGGAATTCCCTGGTGGTCCATTAATTAGGACTCTGTACTTTCACTGCCGAGGTACTAGGGTTCAATCCCTGGTTGGGGAACTAAGATCCCGTAAGTCATGCCCTATGCCCCCGCAAAGCATAGTGCTGTATAATCACCTCCAAATCAAGATGTAGAACACTTGACTGCCCCCCAAAATTCCCTCATGCTCCTTTGCATTAAGTTCTGTCCCCCACCCTTGGCCCTTGGTAATCATTGATCCACTGATACAGACTTTTTTTCTGAGCATGTATACTCACATTTTATAAAATAAAACTAGACCTACAGTATTGTTTTATGAAATGTTTTTTTCACTTACCAGTAGTCTCTGTGCTCAGTCTTGTTTGACTCTTTGTGGCCCAATGGACTGTAGCCCACCAGTCTCCTCCGTCTGTGGAATTTTTCAGGCAAGTATACTGGAGTGGGTTGCCATTTCCTACTCTGGGGGATCTTTCCGACCCAGGGATCAAACCCGTGTCTCTTGTGTCTCTTGCATTGGCAGGCAGTTCTTTACCACTAGCACCACCTGGGAAGTCCCTAGTATGTCATGAAATCTTGCCATGTTGGTAAATGGAAATCAAAGCTGATTTTTTTTAAAGTAGCTATTATTGTACATATGGAGAGGAGAATATTTGGGTGTTATTTTACTTACTTTTCTAAATAACTGATGCATGCACATAGGAAGAGGCACAAAGGGGATTTAGTGAAAAGCCTCTTCCTTGTCCATCAGCCACCTTGTGTGAGATCATTTTCTTCATACTATAGTTTAAATGTATCAATATATACATTGTATTAATGTATACAAAAAAATAATACTGTTTGTGGACATTTTTACCATTTTTAAAGAAAAAATATTTTTATACTTAAGTATTACATCATTAATTCATTCATCATTATTTTTAAATATAATTAAATAAAATAGGCTATAAATTAAAAATCACCAGAAATGCTGTGATCCAGATTAAGCACTATTAACATATGAGTGTATATTCATCTGCTCTTCAAAATTTTCTTTTAAATTTCACAAACTATAAATGAATAATCAGAGAAGGCAATGGCACCCCACTCCAGTACGCTTGGCTGGAAAATCCCATGGATGGAGGAGCCTGGTAGACTGCAGTCCATGGGGTCTCGAAGAGTCAGACACGACTGAGTGACTTCACTTTCACTTTTCCCTTTCATGTGGTCACACAGAGTTGGACACGACTGAATCGACAGCAGCATAAATGAATAATATGCCTGTTGTTTCCAATTCAAGCAATATAACAAAATTTGGAGTAAAATTTAGAATTTCTTCTTTATTTCCACTCTATTCAATGTCTTTAACTTTCATTTCGCTCTTCAAAAATAGCCATTATTAGGCTTCCCTGGTGCCTTAGTGGTAAAGAATCCACCTGCCAGTGCAGGAGACACAGGTTTGGTCCCTGATCCAGGAAGATCCCACGTGCGGCAGAGATAGTAAGCCCGTGTGCAACAACTATTGAGCCTGTGCTGTAGAGCTCAGGAGCCAGTAGTGAGCCCTTGCACTGCAGCTACTGAAGACTGAGTGCCCTAGAGAATGTGCTCTGCAACAAGCGAAGCCACCTCAATGAGAAGCCCACACACTGCAGCTAGAGCGTAGCCCCTACTCCCTGCAACTAGAGAAAAGCCCACGCAACAGCGAAGACCCAACACAGCCAAAAATAAATGAATAAAAAAATTTTAAGTATCCATTATTAAGAGTTTTATAGCTGTCACCTCAGAATGTTTTATTGTAGTTACTAATATTTATGTTCAGGACAATCTCTGTCCATGGGATTTTCCAGGCAAGAATACTGGAGTGGGTTGCCATTTCCTCCTCCAGGGGATCTTCCTGACACAGGGATTGAACCCACACCTCTTATGTCTCCTGCATTAGCAGGCAGATTCTTTGCCACTGAGCTACCTGGAATGTGGAAGTATATGTTAATCATTGATTAATTGATTAAAAGGTGATGATGAGTGTATTTATATATATTAGATATTAATTTATTAGACATATTGCAGATTTTTGTCATCAGTATTTGGAAAATATGGCCTATTTTATTGTTTGTCTTTGATCAGTATGAGAATCTGCCTGTGACTCACAGTGGGCATGATGTTCAGTTCAGTTCAGTCGCTCAGTCATGTCCAACTCTTTGCGACCCCATGACTCACAGCACGCCAGGCCTCCCTGTCCATCACCATCTCCCGGAGTTCACTCAAACTCATGTCCATCGAGTCAGTGATGCCATCCAGCCATCTCATCCTCTGTCGTCCCCTTCTCCTCCTGCCCCCAATCCCTCCCAGCATCAGAGTCTTTTCCAGTGAGTCAACTCTTTGCATGAGGTGGCCAAAGAACTGGAGTTTCAGCTTCAGCATCATTCCTTCCAAAGAACACCCAGGTCTGATCTCCTTTGGAATGGACTGGTTGGATCTCCTTGCAGTCCAAGGGACTCTCAAGAGTCTTCTCCAACACCACAGTTCAAAAGCATCAATTCTTCGGTGCTCAGCTTTCTTCACAGTCCAACTCTCACATCCATACATGACCACTGGAAAAACCATAGCCTTGACTAGATGGACCTTTGTTGGCAAAGTAATGTCTCTGCTTTTGAATATGCTCTCTAGGTTGGTCATAACTTTCCTTCCAAGGAGTAAGTGAGGACAGGGCAAATAAGGGACTCTGTGATGCCAAAATCTCCCCAAAGATTTTTGATCGACACCTTTAAAAAAATTATTGTAAAGACACTTAAAAAGTAAGATGAGGTTGATTACATCAGGGAAGTCCCAAATGTAAGCTTCGTGAGGGCAGGAACATATGTTGATTGGCTGGGCGGGATGCGTGGATGCATAGACACAGGCAGCTCAGGCTGGAGTGGTCTTGCCAGTATGCTGAGGATCAACTACCAAACGTGGGCAGAACCTGTGATAAGCCACTGATGGTGCATGCTCCTGGTGGTGATGGTAGTGGGCCTGAGGGTGTGGGTTGAACAGAGCTGGTGCTAAATCCAGATCGGAGCTCTGCAGTGAGGAGGCTGCTCAGGCGTCTCTGAGGAACTCACACGCAAGCCCTGTGAGAGAACCTGCGCTGGATGACTCACCAGTCAGAGGCATCAATAGTTGGTGTTAGCCAGGGGGAAGATAACAAGCAAAATGGCCAGCAGGGTAAGGAAATCGTCGCCTTTCTTCTGTCAAACCCCATTTTCTGAGGGGCCAGGTCCATAGCTTAGATAGTGTCTTGTAGTGCTGAAATCGAAAAGCAGACGGGATTAGGGACTCTTCTGTAAAACAGTGTCACCATTTCAGCATACTGTCTATTGTTCAGTTAACCGGTTCTTTCTAAAGGAAAGAAACATTTGAATCTGGTGAAAGACTTAATTTTGGTGAGTAATGAAACATATTTGAAGAAAGAAAAATAATTGGCAATCCTGGGATAACCAAGTTTGGATTTGGTTTTTATCACTGCTCTTTACCTATCTGTTCTTGTCCCCAAAGAAATCCTGAAGTTTTCCTTTACAGCTTCAAATCATCCCAGTAAGAATCTAATTCATTTCTATTTCTTTATATTCTATTTTTCTGCTTCACTCTTTGTTTTTTTTTTTTCTTCAG
Seq C2 exon
AATAAAAGAACATGAAGAGGAAGAAGAAAGAAGGAGAAAAGAGGAAGAAAAGGATGCTGAGGAAATAAAGCGACAGAACTCATTATATGAAATAGAAATGAAAAAAAAACAAGGAAAGAAAAAAGAAGAGATCAATGAAAGCAGGAGACTATTTTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001090:ENSBTAT00000046952:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.169 A=NA C2=0.632
Domain overlap (PFAM):
C1:
PF138681=Trichoplein=FE(18.8=100)
A:
NA
C2:
PF138681=Trichoplein=FE(15.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]