GgaINT0048321 @ galGal3
Intron Retention
Gene
ENSGALG00000009824 | C2orf77
Description
NA
Coordinates
chr7:20059513-20060782:+
Coord C1 exon
chr7:20059513-20059706
Coord A exon
chr7:20059707-20060625
Coord C2 exon
chr7:20060626-20060782
Length
919 bp
Sequences
Splice sites
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
3' ss Seq
TTTTTTTTTTTTTGTTTCAGAAT
3' ss Score
12.26
Exon sequences
Seq C1 exon
AGCGCACTTCTACTTGCTGAGGTCCTAAAGGAAAGGGATGCTCAAATTGAATTTAAAAAGTTAAAGTCAGATGTTAACAAAAAGAAGGAAGAAGAAATAGAACGTCGGTGTAAAGAAGCTCTTCTCAGAGAGGAAGAAAAGGTACATCAGCGTTATATGAATCGACTGGCACTAAGCAGAGATCAGCTGGAACA
Seq A exon
GTAAGTAACAGTAAAGTAGGGTTACTTTTGATTAATTATTTAGACTCTCTTCTCACAAATACACTCTGTAAGGTTTCTACAGAGAGTTAATAATCGTTTGTCTCAGAAATGTGACATTTTAGAAAGCATAATCCAAACAAAAGACCTCGCACAAAAAGGAGAAGCTGTCATAGGCAGTGTGGTAAAGCTGCCAACAGTCTGCATGTGAAATCACTTCCAGTAGGCAGCAGTAGGTTTTAATCACATCACTATTCCAATTTTGTTCCTGACAGTGTATTTTAAATCAATTTTGGTTCCAGAAAAGGAACAATTTAAATCAGACTGTTGCTTTGGCCGTAATCAGCTGCCAGAGAATGCATCTAGAGGACTCATCACTGCTACCTCCACTCTTTCAGCTTTTCCAGAGAACTTATGGGGGAGTCACCAATGCTATTTACAGGATTGGTGGGCTGACAGAAGGAATCAAATTCCCTGATGCAGGTAGCAGGTTTAAAGTCTGGTCTCAAGTATTCCAGGTCTGGAAGAACACTGCTGGTTTAAGCTGTTGCCTGCATGTTCAGACAGAGAAGTGTAGGTATGGGGGGACTTACTGGGGAAATCTTGCTCACTGAAGCTGCTGCAGAGATAGGCCAAAATGTAATGGATGCGGAGATGCTCATGGGTTGCCCAGCTCAATGTTGTTACCAGTCATCCGCAGTCTGTCTGCATACACCATGTAGCTAATTTCTGGTCAGATTACTGAAGGGCTACCACTACAATGATGCTGGTTTTTACCTTAGACATTCTACCCACCTTCTCTTCAAAATACCAGATATTATAGTGTTAAAAGTACCTGTAGACATGCAGAATCCCTATCTGTTCATTACTTCATGTGGCCCCTAACCCATAAATTCTACTCCTTTTTTTTTTTTTGTTTCAG
Seq C2 exon
AATAAAGGAGCGCAAGCATCAAGCAGATCTTGCCAAGCTGGAAGACAAAAGAGAAGGAGAAGAAATACAGAGATTGAGCCAACTGTACCAATTAGAACTTCTGAGAAAGATGGAAAAGGAACAGGAGAAAAAAGTTGAACGCCAGAGGCTGTATCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009824:ENSGALT00000015986:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.031 A=NA C2=0.270
Domain overlap (PFAM):
C1:
PF138681=Trichoplein=FE(29.0=100)
A:
NA
C2:
PF138681=Trichoplein=FE(23.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCGCACTTCTACTTGCTGAG
R:
GCCTCTGGCGTTCAACTTTTT
Band lengths:
343-1262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]