GgaINT0048321 @ galGal4
Intron Retention
Gene
ENSGALG00000009824 | CCDC173
Description
coiled-coil domain containing 173 [Source:HGNC Symbol;Acc:HGNC:25064]
Coordinates
chr7:18095720-18096989:+
Coord C1 exon
chr7:18095720-18095913
Coord A exon
chr7:18095914-18096832
Coord C2 exon
chr7:18096833-18096989
Length
919 bp
Sequences
Splice sites
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
3' ss Seq
TTTTTTTTTTTTTGTTTCAGAAT
3' ss Score
12.26
Exon sequences
Seq C1 exon
AGCGCACTTCTACTTGCTGAGGTCCTAAAGGAAAGGGATGCTCAAATTGAATTTAAAAAGTTAAAGTCAGATGTTAACAAAAAGAAGGAAGAAGAAATAGAACGTCGGTGTAAAGAAGCTCTTCTCAGAGAGGAAGAAAAGGTACATCAGCGTTATATGAATCGACTGGCACTAAGCAGAGATCAGCTGGAACA
Seq A exon
GTAAGTAACAGTAAAGTAGGGTTACTTTTGATTAATTATTTAGACTCTCTTCTCACAAATACACTCTGTAAGGTTTCTACAGAGAGTTAATAATCGTTTGTCTCAGAAATGTGACATTTTAGAAAGCATAATCCAAACAAAAGACCTCGCACAAAAAGGAGAAGCTGTCATAGGCAGTGTGGTAAAGCTGCCAACAGTCTGCATGTGAAATCACTTCCAGTAGGCAGCAGTAGGTTTTAATCACATCACTATTCCAATTTTGTTCCTGACAGTGTATTTTAAATCAATTTTGGTTCCAGAAAAGGAACAATTTAAATCAGACTGTTGCTTTGGCCGTAATCAGCTGCCAGAGAATGCATCTAGAGGACTCATCACTGCTACCTCCACTCTTTCAGCTTTTCCAGAGAACTTATGGGGGAGTCACCAATGCTATTTACAGGATTGGTGGGCTGACAGAAGGAATCAAATTCCCTGATGCAGGTAGCAGGTTTAAAGTCTGGTCTCAAGTATTCCAGGTCTGGAAGAACACTGCTGGTTTAAGCTGTTGCCTGCATGTTCAGACAGAGAAGTGTAGGTATGGGGGGACTTACTGGGGAAATCTTGCTCACTGAAGCTGCTGCAGAGATAGGCCAAAATGTAATGGATGCGGAGATGCTCATGGGTTGCCCAGCTCAATGTTGTTACCAGTCATCCGCAGTCTGTCTGCATACACCATGTAGCTAATTTCTGGTCAGATTACTGAAGGGCTACCACTACAATGATGCTGGTTTTTACCTTAGACATTCTACCCACCTTCTCTTCAAAATACCAGATATTATAGTGTTAAAAGTACCTGTAGACATGCAGAATCCCTATCTGTTCATTACTTCATGTGGCCCCTAACCCATAAATTCTACTCCTTTTTTTTTTTTTGTTTCAG
Seq C2 exon
AATAAAGGAGCGCAAGCATCAAGCAGATCTTGCCAAGCTGGAAGACAAAAGAGAAGGAGAAGAAATACAGAGATTGAGCCAACTGTACCAATTAGAACTTCTGAGAAAGATGGAAAAGGAACAGGAGAAAAAAGTTGAACGCCAGAGGCTGTATCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009824:ENSGALT00000015973:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.031 A=NA C2=0.245
Domain overlap (PFAM):
C1:
PF138681=Trichoplein=FE(19.0=100)
A:
NA
C2:
PF138681=Trichoplein=FE(15.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCGCACTTCTACTTGCTGAG
R:
GCCTCTGGCGTTCAACTTTTT
Band lengths:
343-1262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]