DreINT0042446 @ danRer10
Intron Retention
Gene
ENSDARG00000077928 | ccdc173
Description
coiled-coil domain containing 173 [Source:ZFIN;Acc:ZDB-GENE-081104-457]
Coordinates
chr9:48525497-48528468:+
Coord C1 exon
chr9:48525497-48525702
Coord A exon
chr9:48525703-48528311
Coord C2 exon
chr9:48528312-48528468
Length
2609 bp
Sequences
Splice sites
5' ss Seq
ACAGTAAGG
5' ss Score
5.42
3' ss Seq
AACATTTCCCACCTTGTTAGGAT
3' ss Score
6.71
Exon sequences
Seq C1 exon
GGTGCTCTGATGCTGGCGGAGGTTTTGAAGGAAAGGGAGGCTCAGATTGAGCTGAAACGCATGAAGCAGAACGCCACCAAAGACATAGACCGAGACATGTTGGCTGAAATGGCTTCCAGAGAAGAGCAGGCTCTCCTGGAGGAACAGAAGAAAGCCTTACAGAAGAAACAAGAACATCAGGCCATTGTTGAGAGCTTGAAACAACA
Seq A exon
GTAAGGAGACACATTAAATGAAACGTTTCACAAGATTTATCTCATAATAGAGATTTTTATCTCACAATGTTTTGAACAAAAATCTGAACTACACAATATAATCATTTCACAATTAGGAGTTCTATCTACACAACATGATTACACAATAAAAAATTTCACAATTCTTAGATTTATGTCACAATTCATATTTTCATATCACAATTTAGTGAACTCCTCCGGGTGCTCCGTAGTGTATGTGTGTGAATGAGAGTGTATGGTTGTTTCCCAGGACTGGGTTACAGATAGAAGGGCATTCGCTGTGTAAAGCATATGCTGGACAAGTTGGCGTTTCATTCCGCTGTGGCGACCTCTGATGAATAAAGGGACTATGCCAAAAAAAAAAAATGAATGAATGAATGAATGAATTTAATGAACAAAAATCTGAACTACACCACTTTTCACAATTAAGAGTTTTTATCTCACTATTTAGATTTTTACCAAATAAATTTACAATACAAAGTCAGAACTACACAATATAAACATGTCACAATTCTATGTTTTTAATCACAATTAAAAAAAAAGAAATCATAAATCATCATTTCTGTATTTACATCTTGCAATTCATTCATTCATTCATTTTCTTGTCAGCTTAGTCCCTTTATTAATCTAGGGTCGCCACAGTGGAATGAACCGCCAACTTATCCAGCAAGTTTTTACACAGCGGATGCCCTTCCAGCCGCAACCCATCCCTGGGAAATATCCGCACACACATTCACACTCATACACTATGGAAAATTTACCCTACCCAGTTCACCTGTACCGCATGTCTTTGGTCTGTGGGGGAAACCGGAGCAAACCCACGCGAAGGCAGGGAGAAGATGCAAACTCCACACAGAAACACCAACTGAGCGACCTAGTGACCTTCTTGCTTTGAGGCAACAGCACTACCTACTGCGCCACTGCCTCACCACATCTTGCAATTCCACCTTTAAATAGTACAGTTTTAAATTATATTTTCCTACACTTTTCACATTCAATAAATAACCTCAGATTTAAGATATAAACTTCTAAAAATTATGATATAAACAACGAGATAAAATGATGAGAAATGAGAATTTAAATTATTATTAAAATTAAAAATTATTCTAATAATTATTAGAATTAAAAAATATAATGAATTATGAGGAAAGAAAATCTGAATTAGAAAAATATAAACTCAGTATTCTTAAATGTGACTTATAAACTCGCAGAATTTGGAGAACAAAAATTCTAACTTAGAATTTACATTCTGGGAAAAATCTCAATTGAGAAATCAAAGACTTTTTTTCTTAAAATTCTGACTTTACATCTTAAGTTTATATATTGATTATATATTACAATTCTGACATTTTCACTCTCAGTTCTTTGAAAATATATTTTAGTTAAGGAATATGACATACGCTCAGAAATTCTTAAAAACAAAACTGTGACATAAAATAGGAAATCCTTAAGAAGTCATAATTGTTAAACACTTTGAATAATACATTCAGAATTCCTCAGCATTTTAAGATATGTGCTCTCAATGTTAATTCAGAATTCCTAAAATGATAGGCATTGCGTTATTTTAACAGAAATTATTAGAAAAAGGTTCTGACTTTTCCTTGCAATTTTGTATCTCATAACTATTTTTGTTGTTGTCTTGTATTTATCCATGGTTTTAAATGAAACATTGTTAATAGCTTCACTGTAAAAAAAAAATGTCTGTTAAGTAACAGTTTCCGTATTTCATGATTCACAAGTTCGTTTATGATTGTGAATTGCATCAGCTGATTCGAATGTTATCACTCGATTGAATCAGTGGTTATCAGCTGATATATATGGGCCAGTAGGGGCCTTCCTTCTGCACCTATACTGGTAGGCTCAGAAGGCTGTTATCATCCATTCTGGTGGTTAATAAACACACACGGCTGCAGCCGGAAGTTAACGAGAATTATTCATATTTTTTCTATTAATTGTATTTTATTAACGTCTACCCTTACTCCAAACTTAAACCCAACTGTTACAGTAATGTAAAAACAGATCTGGATCTGGAGTCTTCTCTATTAGTATAACTGATTATTCATGAGAAGTATTTTTATTATTTATTAAATTTCCCATTAATTGAATTTTATTAACGTTTACCTCTACTCCAACCCTAAACCTAACCGTCACAGTAATATAAAAACAGATCTGGAGTCTTCTCTATTGCTTTAGCTCAGGGGTGGCCAACCCTGTTCCTGGAGAGCCACCTTCCTGCAGATTTCAGTTGCAACCCATATCAAACACACCTGCCTGTAATCATCACGTGGTGTTCAGGTCCTAATTGATTGGTTCAGGTGTGTTTGATATGGGTAGCAACTGAAATCTGCAGGAAGGTGGCTCTCCAGTAACAGGGTTGGCCACCCCTGCTATAGCTGATTAGTCATGTGAACGGATGATAACAGAAGGCCCCTACTGGCCATATCTATCAGCTGATAACCACTGATAATGCCCATTAAATCGGGTGAAAAATAAAAATATGAATCATAAACTACATAAACTGCTTATTTAAGGATATTTTTTACAGAGTATGTCATATGTGAATTGCCATCAAACATTTCCCACCTTGTTAG
Seq C2 exon
GATTGTGGATCATGAACTTGAGAAAGAGCAGGAGAGGCAGGAGGTCAAACGCGAGGCTGAAGAAATCGAGCGTCTCAGAAATCTTCATCTGTGGGAGCAGGCCATGAAGGAGCGCAAGAAACAGGGGGAGAAGAGAAGCATACTGAAGGCTCATAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000077928:ENSDART00000145972:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.464 A=NA C2=0.660
Domain overlap (PFAM):
C1:
PF096515=Cas_APE2256=PD(65.3=89.9),PF138681=Trichoplein=FE(28.1=100)
A:
NA
C2:
PF138681=Trichoplein=FE(15.2=100),PF112363=DUF3037=PU(5.1=7.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]