BtaINT0035069 @ bosTau6
Intron Retention
Gene
ENSBTAG00000016456 | CDC42BPB
Description
CDC42 binding protein kinase beta (DMPK-like) [Source:HGNC Symbol;Acc:HGNC:1738]
Coordinates
chr21:69279222-69282306:-
Coord C1 exon
chr21:69282289-69282306
Coord A exon
chr21:69279856-69282288
Coord C2 exon
chr21:69279222-69279855
Length
2433 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
3' ss Seq
GCCGCATTCTGTCTTCACAGCCT
3' ss Score
7.68
Exon sequences
Seq C1 exon
CAGGACTTTGACAAAGAG
Seq A exon
GTGAGGTTCGCCTGGCGAAGGCGGAGGCTGGGGTCTGAGGCTCTGTCTGCCCTGGAGTGGCCACCTCGGGCCTCCGTGGTCCCCAGCCCCCCAGAACCGCCTTCTCTGGACTGCTCAGGCTGCACCCAGAGGGGAGGACACGGGCTCCGCTGCCGTGAGTCTTTCGGGAGAAAGATGAGAGTTCTCCCCTCCTCGTCGTGGCCTCAGGAGACCAAGGCCGCCTCCAGGCCCGGGTGCCCCGTGGCTTGGCCCCCTGGCCTAGCTGAGGAGGGTGCAGCCAAGGGCCCCTGAGGTGCTGGGGCCCATCTCTCCTCCCGGGCACTGACTGGGTGGGCGTCCGTGTGCTTGGAGCATGCAGGGAGGCTGCTCCCGTCTAGACTTTTCTGGGTGGTCTTGCACATACGGCTGGAACGCCAGAAGGCGCACAGGTGGCCTGTGCGTCTTGCTCTCTCTCCTCCTCCAACAGCCCCGTGGGATCGGAGTGTGGAGGGTCAACACAGTGCTGTCGGGCGGTCCCACTGCAGACGGCAGTGTCCTCAGTCCCCCTGTGTGGTGGGGGAGGAGAGCAGGAGGCAGGGTGGCCTGAGGGCTGGGCCCCGGCGGCACTTCCGTGACAGGAGGCCAGGGGTGCAGGGCTGCTGAGCTGACGGTAGAAATAGGGCTCCGCTGCATGAGTCCCTCACCTTCCTGGCACGCCCGGAACTCGGGGTGTGTGGGGCGGCCGCTCGCTCCTCCAGGTCCAGCTCTGCACCCTTCACCTGGCTGCTCTTGAGGGACTGTGTCCTCCTCCTCGTTCACAGAAACTCTTCATGGATTGTGGGTATTACCTGTTGCAAGTACTTTTCCCAGTATCACTGACATCTTAATTTTGTCTTTAATTGTAAAGGTGCTGTCATGTAGAAATTTAACACATAGAAATGTTTAGTTCTTATACAGTCTAGTCTGTCTTTTTCAATTAAGGTAGATTCTCTTTTACTCTGAGAACTTGGCAGGCTTTTCCTTCGTCCCTGTGTGGTGAAAGTGTCTGAGGGAGTGAGAGTGTGTAAGTGTGTCTTTGCGTGTGTGGTGAGGATCTGCGCCGCCTTCCCTCTAGAGCACGTGGCACCACTTACTTCCCTCTGTCTTGTGGGGTTACCCTTTAGTAAATTCTTCTGTTTACATGTTTCTATTCCTGGAGCCTCTGCTGCAGCACCTGTAACCCGAGAGCTAGCACAACGCACCTGTTCATCCCCCATTTTCAGGAGTTGCTCAGCTTCTCGCTCAGCTTGATTTACTGGTGGCTGCCCGGCTTTCTCTAGCTACGGTGCGCGGGGGCGGCTCTCCAGTCGCGCACAGGCTTCTCATCGCGGTGGCTTCTGCTGTGGAGCATGGGCTTGGTTGGCCCGTGGCGTGTGAGATCTTTGTTTCCCAACCAGGCATCGAACGCATGTCCCCTGAATTGGCGGGCGAGCTCTTAGCCTCTGGACCACCAGGGATGTACCAATAGTACATTTTGAAGTAGTAAGTTTGGGAAGTGTGAGTCCTCCAGCTTTTTCTTACGCAGTTTTCTTTTGACTTTTCTGGGTCCTCTGCAATTCTATGTGAATTTGAGGATTGGCTTTTCCAGTTCTATGCCTCCCCCAAAAAGTCCTTTAGGATTTTGGTAAGGACTGCATTGAATCTGTAGGTTGATCACGTGGGAAATGTTGCCATCTTAACAGTAGTCTTCTGATCCAAGAACACGGGGTGCCTTTGATTTATTCACGGGGTCTTTTTAAAATGTTTTCAGCAGTGTTTATAGTCTTAGTATACAGATCTTTCACCTCTGGTTAAACTTATTCTTAGATATATTTTATCCTTTTGGATGCTATTGTAAATGGAATTGTTTTCTTAGTTTCCTTTTCAGATTCCATAGAAGCAGAACTGATTTTTGTGTTGACCTTGCATCCTGCAGCTTTACTGAACTCGTTAAGCTCTTTAGCGTTTATATCCCTACAGAGTCTGGTCAGCCATGAGCAGAGATGCTTTTCCTTCTACTGTCCCTCGTGGACGCCGTCTTTACTTGCCCGGTGGCTGGACCTTGTAGCCGGTATTGAGCAGCATGACGGCAGCAGCCTGGCCTCGCTCCTGCTCTGAATGGGAGCTTTGCCTCTCGCCACAGGGCGTGCAGTAGAGGGCTGCTCCCTGACACCTCTGTCATGTGGAGAAAGTCCCTCTCTATCCCCTGTGCTTTTACCATGGAAGAGCCTTACGTCTGTGGCCTTGGACCACGTGGCTGCCACACGGTGGTGGTGGGCCTTGGTCTGTGATCTCTCCTGCAGGGGCCACATGGAAAGTCTGGAGAGGGTGTGTCCTCGTATCTCGGAAGGAGACAGCGGGGCCGCCCCTGCCCAGGCAGCTGCACTCTCAGGCCCAGGCGACGGCTCTCACGCTGGCCGCATTCTGTCTTCACAG
Seq C2 exon
CCTGATTCAGATTCCACCAAACATTCGACTCCATCCAACAGCTCCAACCCCAGCGGCCCGCCGAGCCCCACCTCCCCCCCCAGGAGCCAGCTGCCCCTCGAGAGCCTGGAGCAGCCGTCCCGCGACGCCTGAAGCCACCGGCTCCCGCCACAGGGCCGGGGCCAGGCGGCCTCCAGCGCCAGCGCCAAGACTGAGCTGAGCCTCCAGTGTCGTCCCAGGAAGCGTGGAGTCGACGTGTAGATATGGAGATGAAGAAAACGCTTTATTATAACAGTGACCAGTTCCGTGCTGCACTGTCTGGCGGTAGACCAGATCACCCTCTGCGCGGCTGTGAGGCAACGCAGCTCCGTTTGCACATGAAGGACGCCCCCGGCCTCTCCCGCCCACCCAGGGCCAGCCGCGGCCCCCGCGGGACGCAGGCAGCTCAGGACAGCCTCAGTGCCGCGTCCGGCCCGTTCCCTGAAACTTTCCTAGGCGCTTAGAAGCATCATAGGAAGTTGTGTATCATTCCCAGTGTCACTAGAGTCTTGAAGACAGGAAACGTGGAGGTGAGGTTGTGGCCTTTTTGTTCACTTAGCCCGTACATAGTCAAGAGGCGGAAGTCCTCCTGCCGACCTTGTAGCCGTGGACAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016456:ENSBTAT00000021879:36
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]