GgaINT0056387 @ galGal3
Intron Retention
Gene
ENSGALG00000011432 | CDC42BPB
Description
NA
Coordinates
chr5:52418593-52421151:-
Coord C1 exon
chr5:52421081-52421151
Coord A exon
chr5:52419159-52421080
Coord C2 exon
chr5:52418593-52419158
Length
1922 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAAG
5' ss Score
8.27
3' ss Seq
TTAATGTTTCTCATTAACAGCCT
3' ss Score
8.21
Exon sequences
Seq C1 exon
GTGGCAGTGATGTGGGGGGAGCCATGCCTTCCCGAAGTATGTCGGATCCTGACCAGGAGTTTGACAAAGAG
Seq A exon
GTAAAGGTGCTGTTATTAAATGGAGACTGACAACATCCTGTCACTGTAGATTATTTTCTTCTTCCAGTAAATTAACTATCTCGAAGAATACTTCATAAAGACTGTGTTCTTTGTGGAGATATTTTCTTTCTGCAGATGTTTTCTCTGGCACATAACAAAATCTGATTGTATGTTGGATACACCAGTGCTGAAGCAAAGCTGAGAATCTTTTTATAGTGATATTTTAAGATGTATTGTGTCCTGGATTAAGCTTTGTAGACGAGGCAATTTTGTCTAATTGATGAAATGTCCTCAAAGCTCCAAGAGATGTTCTCTGGGCTATTAGCATAGAAGAGCAAAGAAGTACTACTTAGTTAAATAGTTTTCTGTGCTGCCTTAAGGAAAACTTTTTGTCTTGTAACTTGAAAAGGAATAAAATTTTAAAACGTATAAAGCTGTTTTTAGCAAATGTAAAATTATATGCCAGTAGTCACTAGTCTGAAAATGTCTGCAGAAGAGTGGTGTCCCTGAATCCAGGGAAATTATATGATTGATTGATTTATCACTCCTTGATCTGCCATGGGTGTCGCTTCTTGCAAGCTTTGTTGAAATGCTGAGTGGTGGCTACCTTGCTTTTTCCAGAAGCCAGATCTGTGCAGGATGCCAAATCTCGAGTTCTGATCACAGCCATTCTCAGACTTCCTGTATCACCTCATTGAGAGAATGCTTATCACCATTAAAAGAAGCATGCTAACATGGGACTCTCTCACCTTAGGCATTTCTAAAACTATCTTGATTTATGAAAGGTGCTGATGATAGAGTGTCCCAGTTGCCTGTTGTTCTGTAGCATCCTTCTCAAATTTGGTTATGCGTATTGCTCTACTTGCTGTTTGTAGGCACGAGTTGTTATAACGTGTTCTTTTTTTTGATAGACCTTGCAGATTCTTGGGACATCTTAAATTTAATAAGCAGTAGATTGTAACTTGGAAAAGAATTATCTAATACCACCTTCTACTTGTATACTACTTTTCCTCACGTGGCTTTATCGCAGCATGATCTGGTTCGTCTTGTTACAAAGGGTCTTACTTTGTTTGAGCCATGCAAAGCCTTATGAACAGCATCCTTGTAGGATGTTACCTTTCAATCCATTTACAAAATATGTATTCCCTTTCTTGAAAATAACTAGCTGCTATAGTACCACTGTTTCCTGTGCAGTATTTTGTAAGCTGTGAATTTGTGCAGTGCTCACAGTTGTAGCTCACCAAAATAGTGGGAAACCTGCCAGCCATCCTGTTGAAGTGAGACCAGCCTGTGAAGGCAGATATCCAACAACCAATCTAATGCTGGGGAAATAACTGAATAGGCTGTCTCTGTTAGATACTGACGGAGGGCAGCTCCAGTAAGTATATTCTGTTTCTAGACCTCCGTCCAGCCTGATAATTGGCAACCTCCACTCTTTTGTCAGGCACAGCACATGCTTGTCTTTGTTGCTGGCGCTGTTTGGTAAACAGTTTGTGTGCTCATTTCCTTCCTCCTCACCAAACTGAAGATGATTTCACTGGCATTGTTTACGTGTTTATATGGACAGATAAACCTACTCCTTGGCTATAAAAATGGCTTTAAAAGCTCAGGCTGGTGAACACAGACTAACAATGAACAGATGGATGTGTTCTATCAAGGAGGCTTTGCAGTGGTTGTAGTAGAGGAGCCTGGGCTATAGCAATTTCCACGCACTGCCATACTTCATATTGTATTAGAAGAACCACACTAAGGCCTGTTAAAGATAATAGAAGTATTTGCATTAGTGTTTAGCTATGAAATGAATGTAGTATATGCTATGCGGTAGGTGTTGCTCTCCTTTATTTTTTGAGCACCTTGAAAGCTTTTGAGTGCACGGAATTGATCTTAAGTAAGTGTAATTTTTTAATGTTTCTCATTAACAG
Seq C2 exon
CCTGATTCAGACTCCACCAAACACTCTACTCCATCCAACAGCTCAAATCCCAGTGGTCCCCCAAGCCCCAACTCTCCTCATAGGAATCAGCTCACGTTAGATGGACTGGACCAGTCAACCTGCGACGCATAACACTACCGCTCACACCGTTCTGGCTTCAGTCACCCGCTGCTCCACAGAGCACTCAAGAGCAGGGCAAAGCTGTCTCAGATGCTAGTGCCAAGACTGACACCGAATCTCTAGTGTTGTACAAGAGTAATTATATATCCAGATTGTAGATACAAACTATTGAAATGAAGAAAATTCTTTACTAAATAGTAATTGAGCTTTTTATGCAGAATTGTTCACTGCTCGGTTACGGTTGATTCCTTTCTGCACAGCTGTGACACAGTTTTATTGCATAGGAGCATTTGAGGCCACCAGTAAATATTGTTATTCTTACGCTGAAAAAGAAATAGAGAGAGATACTGATAATGTTGCTACAATATCAGGAATATTATTTTTCTATAGAATGATGTAATATCTCATTAGCAGGAAATCCTTTTAGACACGATTTGGACCTCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011432:ENSGALT00000018644:36
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0078623=PBD=FE(22.3=100)
A:
NA
C2:
PF0078623=PBD=PD(11.7=27.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGCAGTGATGTGGGGG
R:
TCTTGTACAACACTAGAGATTCGGTG
Band lengths:
326-2248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]