HsaINT0031700 @ hg38
Intron Retention
Gene
ENSG00000198752 | CDC42BPB
Description
CDC42 binding protein kinase beta [Source:HGNC Symbol;Acc:HGNC:1738]
Coordinates
chr14:102932379-102938174:-
Coord C1 exon
chr14:102938104-102938174
Coord A exon
chr14:102933844-102938103
Coord C2 exon
chr14:102932379-102933843
Length
4260 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
3' ss Seq
TGCCCTCTTCCTGTTCACAGCCT
3' ss Score
9.95
Exon sequences
Seq C1 exon
GTGGATCGGAGCCTAGCGTGACTGTGCCTCTGAGAAGTATGTCTGATCCAGACCAGGACTTTGACAAAGAG
Seq A exon
GTGAGACTTGCCCAGGTCCAGTGCTGAGGCTATGAGCCACCACTGCAGGAGGAAAAGCAGCCCGAAGATCTGGGGCCCTGGGTGGTGTCACAGCCCTTTTGGAGCACCCCACTTGCGGTGTGAGGGTGACGGGGGCAGGGGTCGGGGTGGCTGTCCCCTCCCCCAGGAGGCTCGTGCAGCAATCTCTTGGTCAGACCCCAAGCTCCTTTGGGAACGCTGACTAGGGACAGGGCTGTCACACTGCCCCAGGAGGAATGGAAGCTTTCCCGCCAACCTGCCTCTTTCCTCTGGACTCCCTGTGTTGTTTTATGTACTTCAATGTGATACATCAGCAGTCTCTTTGGTCTGGGCTGACCTTCCACATTGGTTGGTCTGTCTGCCCCTCCCTTGGGATGGCGCTTGGTGTCAGAGTGTGGGGACCACCTCCAGGACAAGCGCCACTGTTGTGCGCAGCTCAGCCACACTGCTCTGGCCTCAGTTTCCCCTGTGCGGAATGGGGATGAGAATGCAGTCGAGGGAGGCGAGGAGCTGCAGTGCTGAGGGCTGAGGAGTGAGCTGAGGGCTTAGCCCCCGGCGCCATCCTTGGAGGGAGGGAGGGAGGGATGCAGGCGGAGGGGCCATGCTCATCTCTCCACCACACATCTCAGCCCCAGCACTGAGATGTTTTAACATCAGCTGCCGAACGGACGGGCAGATGCCTTGCACATGTTGCTGGTTCTGCCAAGGTCAGCGTCTCTTCCTCTGGAAGTCCTTTGTCTTCTCCATCCTTTGTCCATCCTACTGTTCCACCCTTTATTCTGCAGCAGGCCCCCAGCCTGTCTTTGTCTGGTGGGACAGTCACATTTTTGTAGCAAGCACTGCTGTTACTTTACAGAACGCTCCTGAGTTTGAGTTTGTCCGCTGTTTCCTGGTCATGGGATTTGAAGTGTGTCTTAGGCTGTCACATTATACAGAGGACATGGTGTCCCTCTTAGGGTACTGTGTCCTGAGGCAGCCAGTGCCTGTCTCGTCTGCATGACCTTGTTTGTTCTTTTAAATTTAAGTGAAATTCACAAAACAACAATTTTTTTGTTTTTTTTATTTTCATAATAATATAGAGGCAGGGTCTCACTTTGTTGCCCAGGCTGGTCTCCCAACTCCTGGGCTCAAGCTGTCCTCCTACCTTGGCCTCCCAAAGTGCTCAGATTACAGGCGTGAGCCAGCACACCGGGCCCAAAATAACTACTTTAAAGTTACTTTAAACTACTCAGTGACATTTGGTACATCCACAGAGATGCAGTCACCACCTCTTTCTCATTCAGAAACATTTCCACTCTAGCTGGGCACCACGGTTCACGTGTGTAGTACCAGCTACTAGTGAAGCTGAGGTGGAAGGATGGCCTGAGGAGTTCAAGGCCAGCCTGGGCAGTGTAGTGAGATCTTGTCTCTAAAACATAATAAAAAAGACATTTTCATCATTTCAAAATAAACCCCCTGCCCTTTAAGCACTCTCTCCCCGTCCCTCCCTCCCCTCAGCACCTGGGCAGCCAGTAGTTTCCTGTGATTTCCCTGTCTGGACATTTCGTGGAAATGGAATGCCCAGCCTCTCGTATGGCAGTGTGTTTGACCTTTTGTGCCTAGCTCTCACCTGGCATACTGTTTTGTGGCTCACCCCCGTTGTGTAGCATGCATCAGTGCTGGCGTTTCTATTGCTAAATAATATTCTCTTGTATGGCTAGACCACGGTTTGTTTTCCCATTCTTCCCCTGAGGCACATTTGGGCTGTTTCTGTCCTTCAGCTGTTGTGAGTGGTGCTGCTGTGAACACGTGTGTGCACATATGTGTTTGAGTGCCTGTTTTCACATTCGGGTTTATGCCTGTGAGTGGGATTGCTGGATTTATGTGGTAATTCTATGTTTAACTTTTTGAGGAACCACCAAATTGTTTTCTGCAGCAGTTGTACCATTCTATATTCCACCAGCAATGTGAGGGTTCTCATATCTCGACATCCTCACCAATACTTGTTCTTGTTTTTCTTCTTTTTAATAGTCGTCCTGGTGGCTATGAAGTAGTACCTGATTGTGGTTTTGATTTGCATTCTCTAAAGACTTATGTTTAGCATCTTTTCATATGCTTGTTGGCCATTTCCGTACCTTCTTTAGAGAAATGTCTACTCAAGGCCTTTACCCATTTTTGAAATGGGTGGTTTGTCCTTTTGTGGCTGGGTTGTAGGAGCTCCTGGCATGTTCTGAGTACCAGGCTCTTGTGAGAGATGTGATGTGCAGATGTCTTCTCTTGTTCTATGGGTTGTCGTTATTTACATTCCTCATAATTAATGTCTTTTTTTTTTTTTTTTTTTTGAGACAGAGTGCAGTGGCACGATCTTGGCTCACTGCAACCTTTGTTTCCTGGGATCAAGTGATTCTCATGCCTCAGACTCCCAAGTAGCTGGGACTACAGGTGCCCGCCACCATACCTGGCTGATTTTTGTATTTTTAGTAGAGGCGGGGTTTCACCATGTTGGCCAGACTGGTCTCAAACTCCTGACCTCAAGTGATCTGCCCGCCTTGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGGCACTATACCCGGCCTAGTACAGCCATCTTAACAATATTTTTACTCCACGAACATGAGATGTGTTCCATTTATTTAAGCTATTTTTTCAGCAATGTTTTGTAATTTATAGTGTACACATTTTTCCCTTCTCTGGTTAAACTATTCCTAGCTATTCTTTTGGATGCTGTTGTAAATTGAATTTTTTTTTTCAGTTTCCTTTTCAGTGTGTTCATTTCTGGTGTATAGAAACACAACTGACTTGTGTGTGTTGATCTTATACCCTATAACTTTGCTGAGCTTATTAGTTTTTTGTGGATTCTTTTCTTTGGGATTTTCTACGTGTATAATCATGTCATCTGCAAAGAGAGATAGCTTTACTTCCTTCCTAACTTGGAATCCTTTTCATTTCTGTTTCTTCCCTGATCGCTCTGCCTAGAACCTCTAGCCCCATGTTGAATAGCAGTGGTGAAAGCAGGCATCCTTGCCTTGTTGCTGATCTTTTTTCTTTTTTTCTTTTTTTTTTTTTTTTGAGACAGAGTCTCACTCTACATGTAGCCCAGGCTGGAATGCAGTGATGCGATCTCGGCTCACTGCAAGCTCCGCCTCCTGGGTTCACGCCATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGACTACAGGTGCCCACCACCATGCCAGGCTAATTTTTTTTTGTATTTTTAGCAGAGACAGGGTTTCACTGTGTTAGGATGGTCTCAATCTCCTGACCTCATGATCTGCCCACCTTGGCCTCCCAAAGTGCTGGGATTACAGGTGTGAGCCACCGCACCCGGCCCGTGGCTGATCTTAGGGGAAAATTTTGTCTCTCACCATTGGGTATGGTTAGCTGTTTTATTTTGTTGAGGAGGTTCCCCTCTATTCCTAGTGCTTTTCTCAGGAAAGAGTGTCGCGTTTGTGACTTTGACTGCTTGGTTGCAGGTGCGCACCACTGTGCCCGGCTGATTTTTGTTTTTTTTGTTTTGTTTTGTTTTGTGACGGAGTCTCGCTCTGTCGCCCAGGCTGGAGTGCAGTGGTGCAGTCTCGGCTCACTGCAAGCTCCGCCTCCCGGGTTCACGCCATTCTCCTGCCTCAGCCTCCCCAGCAGTTGGGACTACAGGTGCATGCTGCCACGCCCGGCTAATTTTTTGTATTTTTAGTAGAGACGGGGTTTCACCATGTTAGCCAGGATGGTCCCAATCTCCTGACTTTGTGATCCGCCTGCCTTGGCCTCCCAAAGTGCTGGGATTACAGGCGTAAGCCACCACGCCCGGCCTGATTTTTGTGTTTTCAGTAGAGATGGGGTGTTACCACATTGGCCAGGCTGGTCTCAAACTCCTGACCTCAAGTGTGATCCACCCACCTTGGCCTCCCAAAGTGCTGGGATTACAGGCAGGAGCCACTGCGTCCGGCCCCATCTGATTTCTTCACTACAGAGTTGCTGTCTTTTGTAATGATAATTACCATGTTATTTTTGAGTGGGATTAGACATCAATTTGTGACTCTCACCAGCACGCCTAAGGGCCCCACGAATCGCTGGTGTAGAGCGTGTGTGTTTTCATAACATGAAGGGAGAAGAGCAGTTGCGACAGTTGTCCCTGAGCAAACATTTGCATCCAGCTGGGCACGCGTGCCTCCCCAGGCTAGGGCAGCGGGTGCTCACCCTGCCCTCTTCCTGTTCACAG
Seq C2 exon
CCTGATTCGGACTCCACCAAACACTCAACTCCATCGAATAGCTCCAACCCCAGCGGCCCACCGAGCCCCAACTCCCCCCACAGGAGCCAGCTCCCCCTCGAAGGCCTGGAGCAGCCGGCCTGTGACACCTGAAGCCGCCAGCTCGCCACAGGGGCCAGGGAGCTGGAGATGGCCTCCAGCGTCAGTGCCAAGACTGAGCGGGCCCTCCAGTGTTGTCCAAGGAAATGTAGAATCACTTTGTAGATATGGAGATGAAGAAGACAAATCTTTATTATAATATTGATCAGTTTTATGCCGCATTGTTCGTGGCAGTAGACCACATCTGTTCGTCTGCACAGCTGTGAGGCGATGCTGTTCCATCTGCACATGAAGGACCCCCATACAGCCTGTCTCCCACCCCTGACAACCCGAGAGGGCATATGGGGCCCTGCCAACACCACTTCCTCAGCAGAAACCCGTCATGACGCGGCTGCTTCGGAAGCAGACATCTGGGGACACAGCCTCAGTACCCAGTCTTTTCCCTAGTTCCTGAAACTTTCCTAGGACCTTAAGAGAATAGTAGGAGGTCCTATAGCATTCCCAGTGTCACTAGAATTTTGAAGACAGGAAAGTGGAGGTTAGTCTGTGGCCTTTTTTTCATTTAGCCATTGCACAGTCAGCTGCAGAAGTCCTGCTGACCACCTAGTCATGGACAAAGGCCCAGGACCAGTGACACCCTGCGTCCCTGTGTGCATTAAGTTCATTCTGGGTCGCAGCCATGAAGTGTCACCAGTATCTACTACTGTGAAGTCAGCTGTGCTGTTTTCCATTCGCTTCCACGGCTTCTGCCTCCTGCCATAAAACCAGCGAGTGTCGTGGTGCAGGCAGGCCCTGTGGCCTGCTGGGCTGAGGGAAGTCAGAGCCCCAGGGCGCCACGAAGCAGCCACTGGGATACCCCACCCCGCCCCGCCCTGCCCGCCCCCCCCCCCACCAGTCCTGCCCCCGCATGGAGCCCCCGTGATTAGTAGCCCGTATGATCACGTAGACCCACCCAACACACTCCTGCACACTGGCCCCGGCCCACGGCACAGCAATCCCCTGCGCGTGGATTTCACCTCACCCTTTGTACCAGATGTTGAGTGACCAGCTCTGTGGCCCTGTGTCGTCAGAGGCTTGTGATTAACTGTGGCGGCAGACACAGCTTGTCCACAGCTTGGGCCAGGCTTCCCCTGTCCTCCCACCGGTCGGCTGCTTGGCAAGGCTGTTCAGGACGTGCACTTCCCCAAGTCGGCACTGAGTGGCCCAGCACCGCCTAGCCCTGCCACCCCACTGCCCTCCTGGGCCTTCTGCTGGATGGGCACCTGGGGGGTTCTGGTTTTTACTTTTTTAATGTAAGTCTCAGTCTTTGTAATTAATTATTGAATTGTGAGAACATTTTTGAACAATTTACCTGTCAATAAAGCAGAAGACGGCAGTTTTAAAGTTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198752:ENST00000361246:36
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development