MmuINT0032890 @ mm10
Intron Retention
Gene
ENSMUSG00000021279 | Cdc42bpb
Description
CDC42 binding protein kinase beta [Source:MGI Symbol;Acc:MGI:2136459]
Coordinates
chr12:111292972-111294964:-
Coord C1 exon
chr12:111294894-111294964
Coord A exon
chr12:111294233-111294893
Coord C2 exon
chr12:111292972-111294232
Length
661 bp
Sequences
Splice sites
5' ss Seq
GAGGTATGT
5' ss Score
9.81
3' ss Seq
CTCTCTCTTTGCATTGGCAGCCT
3' ss Score
6.71
Exon sequences
Seq C1 exon
GTGGGTCCGAGCCTGGAGTGCCTGTGCCTCTGAGGAGCATGTCCGACCCCGACCAGGATTTTGACAAAGAG
Seq A exon
GTATGTGTTCCCCAGCACAGAAGTCTATGGCCACACAGGGCCTGCAGAGTGGAGACAGTGCCTCTGATGTGGGGAGAGCACTTCGTACCTGTCACCCCAGGGCCAGCTGGTGGAGAACTGGAACAGCGAAGACACCGTACAGATGAGAGGGCAGCCCTTAGCCCCTCTGTAGCGCTGCACGCCTGGGATATAATGGCCTCAGCACAGAGCCTGCAGTAGCACTGGGCAGCCCAGGGTCCTCCCCCCTCCGCCCCCCCCACAACAGTGTGATCAAGGTTGTGGGGTCCCCGTGCATACATCCCACCCAGGGGTAAGGATTTCCCTTAGAGTTGAGCCAGGTTCTACCAGAGGCACCTCTCCTTCTCAACCTCTCTGTTCTCTGAAGGGATTTCATGTAGCCCAGGCTAGCCTCCGGCTTACTATGTAGTTGAAGGTGGCCTTGAGTTCCTCTTCCTTCAGGAGTAAGCCCTACTGTAGGCGTGGTGTGGGCGTGGGTTCCATGCCCTGCTGTGTCTGTGGTGGTGCCTGACAGACCCGGGGCACATCAGCCTGATGTGCCCATCTGCCACCTAAAAGGGCCTTGCAGAGGCTGTGTACAGCGCGTGGGCACGCAAGGGACAGGAGCATCGCCTGGGCTCACACTCTCTCTTTGCATTGGCAG
Seq C2 exon
CCTGACTCTGATTCCACCAAACACTCAACTCCATCCAATAGCTCCAACCCTAGCGGCCCCCCAAGCCCCAACTCGCCCCATCGGAGCCAGCTCCCTATGGAAGGCCTGGACCAGCCATCCTGTGACGCCTGAGGCCTCCAGCATAGCACCGTGGGGCCAGGGAGCCCGAATGGCCCCAGCATCAGTGCCAAGGCTGAGCTGACGACTCTCCAGTGTTGTCCAAGGAAATGTAGAATCAGTTTGTAGATAGATAAAATAATCTTTATTATAATGACCAGTTTTGTGCCACATTGTTGGTGGCGATCGACCAGATGTGTTCGTCTGCACAGCCGCGAGGCAACACTGTTCCGTTTGCACATGAAGGACCACCACTCACCCCTCCCCCCAGGACCACCCAGGCCCACATCCACCGGCTTCCTCAGCAGATGCTGGGGTATGGCCTCAAGACCTTCCCTCTCTCCTGAAGATGTCTCAACCCTACAAAGACTAAAGTGCGCCATCCCAGTGCCACAGAAGGCAGAGGGTAGTTGGTGGCCTTTTCATCCACTTAACCCTGACACAGGCAGCTGCTGACCGGCCGCCTGTGTCCTGTGTCCGTCCATTCTGGGCCACAGCCATGAGATGCCCCTCCTGCTGTGAAGGTAGCTGTGCGCTGGCTCCCAGTGTGCCTGCAGCTGCCACAGGCCAGCACACGGTGGGGAAGGCAGGCCCATGGCCTCCTGAGTTCAGAGGCAGCCGGAGCCTGGGGAGCCATGCCCCAGGCCCTGTGACATCCCCTCGCCCTGCATGGAGCCTGTGTGTCACAGAATCGCCCAACACTCCTGCACATCAGCAGCACCAGGCCCGGGAGTGCCACGAGTGTTGAACCTCATCCCTTCCTGTGTCCTGGGCTGAGTGACCAGGTCAGTGGCCCTGCCCGTGAAGGCTGGCGATTAACTGTGGCAGCAGACATGTCCTGTCCTCATCTTGGACAGGCCTCCCTTCCCCGTTGGCGTGCTTGGTGACACGATTCAGGGTGAGCACTTGGCCGAGTTGGCACTGAGGGTGGTGGCACAGCAGGCCAAGCCTGCGTGTCACACCCAGCACCTGCTGCCTGCCCCACCCACCCTCCCCGGCTCTGTGCCGGGGCAGGCACCTGCTGGGGGTTCTGGTTTTTACTTTTTTAATGTAAGTCTGAGTCTTTGTAATTATTGAATTGTGAGAACAATTTTGAACAATTTACCTGTCAATAAAGCAGAAGGCAGCAGTTTTAAAGTTCTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021279:ENSMUST00000041965:36
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCCCGACCAGGATTTTGAC
R:
GTGCAGACGAACACATCTGGT
Band lengths:
354-1015
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types