RnoINT0032664 @ rn6
Intron Retention
Gene
ENSRNOG00000009675 | Cdc42bpb
Description
CDC42 binding protein kinase beta [Source:RGD Symbol;Acc:621753]
Coordinates
chr6:135746754-135750785:-
Coord C1 exon
chr6:135750715-135750785
Coord A exon
chr6:135748018-135750714
Coord C2 exon
chr6:135746754-135748017
Length
2697 bp
Sequences
Splice sites
5' ss Seq
GAGGTATGT
5' ss Score
9.81
3' ss Seq
CTCTCTCTCTGCATTGGCAGCCT
3' ss Score
6.57
Exon sequences
Seq C1 exon
GTGGGTCTGAGCCTGGAGTGCCTGTGCCTCTGAGGAGCATGTCTGACCCCGACCAGGATTTTGACAAAGAG
Seq A exon
GTATGTGTTCCCCAGCACAGAGGCTGTGGCCACACAGGGCCTACAGAGTAGAGACTACTTCTTGTGTGGGGGAGAGCACTTCATCACCTGTCACCCCAGGGTCTGGTGGTTGGGAACTGGAACAAGGAAGACACCATATATCTGGGAGCGCAGTCTCGAGCCCCTCTGCAGCTCTGCATAGCCTGGGGTATAATGGTCTCAGCACAGAGACCCCAGTAGCATTGGGCAGCCCAGGGTACATGGCTGCCAACGTGAGTCATGGGTCTCCTTCAACACTGTGACCACGGTTGTGGGGTCATCAGGCACACATCCCACCATGGGGTGAGGTTTCTTTTATAGCTGAGCCAGGTTCAGCCAGAGGCACCTCCTTCTGAACTTCTCTGTTCTCTGAAGGGATTTCATGTAGCCCAGGCTGACTGACCTCAAGCTTACTGTGTAGTTGAAGATGACCTTGAGTTCCTGACCCTTCAGGAGTAAGTCCTACTGTGGCGTGCTGTGGGCGTGCTTTCCATGCCCTGCTGTGTGTGTGTCTGTGGTCATGCCTGGCCAACTATCCCTGGGGCAGGGGCTCACAGTGTAGCTCTGTCTGGCCTGGAACTCACAATTTTGCCCAAACCCTGAGTTCACTGAGACCAGCCAGCCTTTGCCTCCTAAGCACTGACTAAAGGTGGCCACATCCTGCTTGTCTTTGCTTTCCTGACAGGACCTCAGTCCGCATAACTCAGCCTGGCTCTGCACTCTGAGGCTTCCTGCGCCTCTGCTCCTGGCCTCTGTGTGTGACATAGCCTGGCTCCCGTGCTGGAGAACCTTCTCTGGTCACCTGTGTGCCTTCCGTTCTAGGACACTTGGTGTGGGTGTGAGCAGCAACACTCCATGACTGGAAGGCAGCAGTGTCCTGCCTCCCCTGTGGAGTGGGCATGAGAGAGCAGATGAGACTTCACGAGCTGCACGTCTGTGCCTTAGGGTCTCTCTGCAAACCGGAGCTGGCCTGTCACCCACAGCCACCCAGTATTGGCGCTGACAGCCTCTGCTGCTCCACTTGCCATCCTGAGACTCAGCACTCTGGCCAGGGGACTCCCTGCCATCTTCCCTCTCCTTTGGCAAGCCCCATGGCGCGCTGGGTTTCTCTTGCTTTCTGAAGTCGGTCATTAGGTGTGGTTTTGTTTCTTATCTTATCTGGGTGTTTGCCTGCGTGTACGCCTGTGTACCATGTGTGTACCTGGTGCCCAAGGAGGCCAGAGGAGGGTGCCAGGCGCTCTGGAACTGGAGTTGTGGGTCGTTGTGGGTCGCCATGTGGATGCTGGGACCAAACCTGGGTCCTCTGAAGGAGCCGCCAGTGTCTCAGTGCTTCGCTGCCTCTCCAGCCCCCACCCCTCACATTCCTGATGATGTCCCTTGTCGTGCAAAGGTTATTTTTTTCCAGTCACAGGTGCTTTTGCTATTCTGTCTGGATCTGTTTCCGTGCCGCAAGCACTCATGTTCTTGGCGGTTCTAAGACTCTTGATCCGTGTTAGTTTCTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAGAGCGCACGTGTAAATACCCCGTGCCATCACTTCTGGATGTGTTCTCCGCCCTTGGACATCTCGACAGCCTTGCTGAGACACCACACTGCTGCTTGTAGTAGACTTTGAATCAAACAGGAGGGCGAGCCCCTCGCGGTTTTCTTTAGTGCCGGGGATTGAACCGCAGAGCGTCAGCTCAGCCCTCGCTGTCTCTCACTGTGACACATGGTGAGTTTCCAGGCCGATTTGAACGTCTCTGGCACAGACCTGGAGCCTTCACACTCCCACACAACTGGGATTGCAGGCCAAGTCACTAGGCCCGGGTTCTGTGAGAGGCCATTGGAATTTCAGGAGATCACATTGAGTCTGAGGGCCACTTTAGGGATTGACACCATCTTAATCTCTAGTCGTGAATGTGGGGTTTTCCCGTTTATATGAGTCGCCTTGATTTTTCCGTGTGTGTGGGAGTGGGGGTTGTTGCTAAAACAGGCCAGATCCCCTGGTATGGAGTTATAGTCAATCGTGAGCTGCTTAGTGTGGGTGCTGGGAACCGAACCCAGGGTCTCAAAAGTACAGTGTGTTTCACCAGCTCCTTAAGTAGTTTGTAGTGGATGAGACCCTCCCCCTGCTCTTCAGGTTACTGTGGGTGCTACTGTGAACGCAGTCGTCTGTGGCTGTGCTGACGCTGAACCCTGACCCTGCTGCACTTGCATAGCTCTGTTTCGCTCCTGGCGTGCATGGCTTCTTTGGGACCTTGTGTGCAGAACCCTGCATAACTCTGTCCCTGTAAACAGCGTCAGGTCCCTTCTAGCGCAGTGTTGAACTGCAGCAGCTCGTTCTGTCCCTAACCTTAGGAGAGCTGTTTCCCTCACTGTTAACCCTGGGCTCACAGGACAGCCTTTGAGAGACGCGGCTGAAGTCCCCTTCTGTCTATTCCTAGCGCTTCCCACTTGGCTACAGTTGTCTGGCTTCCTTCTGCACTCCCTTCTCTTGTGCAGTGAGGACACCAAGGTACTTCTGAGTGCAGGGCAAAGGCTGATGAGCTCGCCTGCCACCTGAAGGGCCCTGCAGCAGCTGTGCACAGCGCAGGAGCACACACGCAGGGGCGAGCGAGCGTCGCCTGCTCTCACTCTCTCTCTCTCTGCATTGGCAG
Seq C2 exon
CCTGACTCTGACTCCACGAAGCACTCGACTCCGTCCAACAGCTCCAACCCTAGCGGCCCCCCGAGCCCCAACTCACCGCACCGGAGCCAGCTCCCTCTGGAAGGCCTGGACCAGCCAGCCTGCGACGCCTGAGGCCGCCAGCATAGCACCATAGGGCCAGGGAGCCCAGATGGCCCCAACATCAGTGCCAAGACTGAGCTGACCCTCCAGTGTTGTCCAAGGAAATGTAGAATCAGTTTGTAGATAGATAAAGTAATCTTTATTATAATGATCAGTTTTGTGCCACGTTGTTGGTGGCAACCGACCAGATGTGTTCGTCTGCACAGCCGCAAGGCAACACTGTTCCGTTTGCACATGAAGGACCACCACTCACCCCTCCCCCCAGGACCACCCAGGCCCACATCCATCGGCTTCCTCAGCAGATGCTGGGGTATGACCTCAAGACCTCCCTCTCTCCTGAAGCTGTCTCAAGGCCCTACAAAGACTAAAGTGCGCCAACCCAGTGTCACAGAAGGCAGAGGATAGTTTGTGGCCTTTTCATTCACTTAACCCTGACACAGGAAGCCACAGCAGTCCTGCTGACCGGCCGCCTGTGTCCCTCTGTCCGTCCATTCTGGGCCACAGCCACGAGATGCCCCTCCTCCTGTGAAGGCAGCTGTGCACTGGCTCCCACTGTGTCTGCAGCCTGCCACTGGCCGGCACACACAGGAGTTCAGAGGTGGCCAGAGCCTGGGAGCCATGCCCCAGGCCCTACGACGCCCCCTCCCCCATCGCCCTCCCCCACCCTGCATGGAGCCTCTGTGCTTAGTGGCCGAGTCAGTCACACGACTGCCCCACACTCCTGCACATCGGCAGCACCACGGCCCGGGAATGCCACGTGTGTTGAACCTCATCCCTCTGTGTCCTGGGCTGAGATCAGGTCTGTGGCCCTACCCATGAAGGCTTGCGACTAACTGTGGCAGCAGACATGTCTTGTCCTCGTCCTGGACAGGCCTCCCTTCCCCGCTGGCGCACTCGGGGACGAGATTCGGGGTGAGCGCTTGGCCAAGTTGGCACTGAGGGTTGTGGCACTGCTGGCCAAGCCTGTGTGTCACACCCAGCACCTGCTGCCTGCCCCGTCCACCCTCCCCGGCTTTGTGCCGGGGCAGGCACCTGCTGGGGGTTCTGGTTTTTACTTTTTTAATGTAAGTCTGAGTCTTTGTAATTATTGAATTGTGAGAACATTTTTGAACAATTTACCTGTCAATAAAGCAGAAGACGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009675:ENSRNOT00000039059:36
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]