BtaINT0038418 @ bosTau6
Intron Retention
Gene
ENSBTAG00000004908 | CHRNE
Description
Bos taurus cholinergic receptor, nicotinic, epsilon (muscle) (CHRNE), mRNA. [Source:RefSeq mRNA;Acc:NM_174272]
Coordinates
chr19:27122156-27122533:+
Coord C1 exon
chr19:27122156-27122270
Coord A exon
chr19:27122271-27122346
Coord C2 exon
chr19:27122347-27122533
Length
76 bp
Sequences
Splice sites
5' ss Seq
TACGTAAGC
5' ss Score
5.9
3' ss Seq
CCCGCCCCCCCCCCCCCCAGGTG
3' ss Score
12.91
Exon sequences
Seq C1 exon
GTACCTCATTTTCGTCATGGTGGTCGCCACACTCATTGTCATGAATTGCGTCATCGTGCTCAACGTGTCATTGCGGACGCCCACCACTCACGCCATGTCCCCGCGACTGCGCTAC
Seq A exon
GTAAGCATCGGGTGGGTGGGCTTCGGGAAGGAGGTGGGGCTTCAAGCTAACCTCGCCCCGCCCCCCCCCCCCCCAG
Seq C2 exon
GTGTTGCTGGAGCTGCTACCCCAGCTCCTGGGCTCCGGCGCGCCCCCCGAGATCCCCCGAGCTGCCTCGCCCCCAAGGAGGGCGTCGTCCCTGGGCCTCCTGCTCCGCGCGGAGGAGCTGATACTGAAAAAGCCGCGGAGCGAACTGGTATTTGAGCAGCAGAGGCACCGGCACGGAACCTGGACGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004908:ENSBTAT00000045415:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.063
Domain overlap (PFAM):
C1:
PF0293211=Neur_chan_memb=FE(16.7=100)
A:
NA
C2:
PF0293211=Neur_chan_memb=FE(27.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCACTCACGCCATGTCC
R:
CGCGGCTTTTTCAGTATCAGC
Band lengths:
171-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]