BtaINT0038708 @ bosTau6
Intron Retention
Gene
ENSBTAG00000008963 | CIT
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1N747]
Coordinates
chr17:57982323-57987588:+
Coord C1 exon
chr17:57982323-57982502
Coord A exon
chr17:57982503-57987281
Coord C2 exon
chr17:57987282-57987588
Length
4779 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACA
5' ss Score
8.88
3' ss Seq
CCCACCTCCCTCTCCTGTTGTCA
3' ss Score
0.29
Exon sequences
Seq C1 exon
GACCCCCGCCCGAGCATATTTGGAAATCCCCAACCCACGCTACCTGGGCCCTGCAATCTCCTCAGGAGCCATCTACCTGGCGTCCTCATATCAGGATAAGTTAAGGGTCATCTGCTGCAAAGGAAACCTGGTGAAGGAGACCGGCACCGACCACCACCGTGGCCCATCCACCTCCCGCAG
Seq A exon
GTAACACGCCTTCTCCTCTTCCTCATCACAGAGGGGCAGAGGAGGAGGAAATCTTGCTTAACTGGTTGACAGTTTTCCCATCTTCAAGCTCAAGCCACTTATTTCTTTGAAACCAACGGCATTTAAATGACAGTCCTTTATAAGCAACAGGAGAATTTTTTAGTGTCCCCTTGGAAAAGGTGGAAGGAAATGTCTAGCCTTTTCTCTGGTGCTGTTTCCTGTGGCTGTGTTCATAACGCATTCATTGCTTTAGCTGATAAGTGTGCTGCGCTCACTGGGCTTGCTGAGGGAGACTGAGTGTGAATAGTTGGACTCTTTTCCCTCCCTGAGGAGGCCCATGGGCAAGACAAGCACCCATGTGATGCCAGCTAGCCAAGGAGAGTGGGGTTCATACTTGGGTGGTTTAAAGCGCTGCGGAAGCTCAGAGGAGGGTTCCCAGCTTGGACCTGGGGGCTAAGAAGGATTTCCCAGGAGAAATGAGGCCTTGAATACAGGCTATACTTTGTTGAAAAGCAAACATTTCAATTAATACCATGTGATGACTCTGAAAATCAGCTCCCCCTTCCCCTCCCAGGGTGTGTTGCTGCTATTTGTTGAGTGACTCTCTGGACTAATTATATAGTCTGCATTCTTTGTTATGTGAGCCACTGAAGTTTCTGCGTGATTAGGGTAGTGGGCAGATGAATAACTAGAGAGGATTTCCTTAAATGGTGTGTGTGTTTGGAGTTTGGGGTACACCTTCAGCACTCAAGAGTCAGCTGCCGAGACTGAGGCCTTTCTAAGTTTTTTCTGGGTTTGGGTACAGGCTTACTCGTGTGTGTGGCCTTACAGATCCCTAGGAACACACAGGAGGACTTTCTTCTGACTGTTCTGGCTAGCCTCTTGTTTTCCCCAGGTTGGTTTCACTGCCTCAGACATTAGCCACATGAAACAGTCACCACTGTTTGTTTTTCCGAAACCATCCAGAGATAAGGGACTTCTGTTGTGCAAGACCTGCATCAGGTCAATTAAAAACAAACCCTGAGAAGAAAGGAAGAGCAGGAGAAAATGAGAAGGAAAGCAGCAGCATTGGATGAGGATTCCCACGTGGCTCTTGGCCCTTCTTTGTACAGTGCAGACAGGATGCTCATACCGTCTGTGATTGCTGTCAGTTCCCTCCATGGAAGCAGGTGACTGGACACCCACAGCCTCGCAACATGAAGTGACACTGTTAGTTCCTTATTGGATTTTTGCTTAAGTGAAGTACGTATGGTTGGGGATCCAGGGGACTCGGAGACACAAGAAAGTCTACTCGTATTGAGTCTGGGAAAGCCGCTTCTCTCCTTGTCTTGAAGGCTGGGGCCATGTCTTCTTCAGACACTAATAAGGAATCTTAGGTCCTCTGTGGGCCCGTCCCCCCAAATTATTATAACTCTAGTCTTTCCCAGGAGGACCGAGATAGATCAGATAGTGATAATTTTCTGAGGCTGGGGTGCTCCAAGCCCAATGTGCTCCCTGCAGTGGTACCAGTGTGCTTGTTTTTAAGGGAGAAGCCTGTTTTGGGGCATCCTTACCCTGCTGGTCCCCAAGCACACGTCCCCTTCTTGATAGAGGTGGCAGCACACCGTGCACACACGCCTGCGTCTTGGAAGCTGCCTCATGTGGGTGCACAAAGTGTTTCTCTTTTTTAATGCCTGACCAGCATTCCTTCACGTGACTATACCTTGTTTAACTGCTCCTTTATCAGCGGGCATTTGGGTGTTTCCAGTTTGTTGCTGTAGTAAAGGACTTGGTATATCTTCACTTCGAATGCTTGGAATCTACCTGGAGGCTGAATTCCTAGAAAAGGAATTGTTGGCGATTGCGACAGGTGTCCCTGAGTTTTCCTCCCTGGAGGCTGTACTCTTCTGTTATTCCACCAGCAGCGGGTGGAAGGGGGATGGGCTTTGTCTTGACCCCCCAGGGTGAGGAGCCAGATTCAGTTCCATGTGTGGATTTGAGACGTATAATTTTAAGACGTTGGCCCACAAAGGAGATGAGCTTTCTCAACCTAGAGGAATATTTAATTGACCTAGGATTTTACTTTTTGTGGACGGGTTTACAAAGCCCACATATTTACCCTATACAGTTATGTGGGCCCCCTGCCATGTGCCAGACCCAGGGTTGGGGATACACAAATGAAGACAGTTTTTATCCCCAAGGGACTCAGTTTAGTGGACACCTCTAAGGTTACAAAATACTTAGTCTCAGAATATTAAGTTGACAGCTTTCTTTTCTAAGCTCTATGTCCTAATGAAGAGTGTCTATTTTGTTAAAATACAAGTGTTGGTCAGAAATGTCTGTCAGTGTGATTTCAATTCCAGGAACTTGCTGGAAAACTGGAAGTGCTAAACAGTCAGCTGCCCCTCGCTCTTTTGGCCTCTGCTTCAGGGGTGACTGCTCAAAGGGCTCTAGTCCCCTCCTGAAAAGTCTAGATTTTATTTACCCTCTAGGTCATGCAAGAAGAAACCCAAGTACTGTAACTAGGTATTTTTTTCCTCCACTGCCTCACTAGTTAGATGTTCAGGGACCTTCCTTTTGATATGACGTGGTGTGTCTGTGAGAAGTGACTTACTCTGTGGTGAAAATGGTTCCAGTTCCTTCTGTTCTGGAAAGCCAGCTGCTAGGCTTTATCTCTTGGCTTATAAAACCGTCTTTTTGCTGCTGACTGCCTTGGGCAGGTCCAGAATGTAGAAGGCCAGCATGGGAGACTGCTTTACTGCAGGCCACACCACCCTCGTCTCTTTAGCAGAGCAGGAAATGTAACCCTATGCAAGAAACAGAAAATTGGTGTGGTAGATCATTGGTTATTAACAGATACGGAGATGGAAGATGGCCAGCTCAGCCTACAATAACGAGTGTGTTCTTCATCCCATTAATCCCAGCTGACTTATCAAATGGCCTTCCTTGAACCACTCTTCTTCCTCTGGGCAGTGAGCACCCTCTCCCTTGCTTTATGATGGGCACACTTTATAATTTCTCTTCCATTACAATAGGCTTAATATAATTCTCTTGAACTTTTTTGTCTTCCATATCACAGAGCCACATGGCTAGAGATGAAAAGAAACCTTGACTTCAAGATGTTGAAATCAAAAGTCACCCTAAGTTTTACTGCTGCAAACACAGCACAATAAAGTGTGGCTTTCTGAGCACTGGTTGTTAGAGTTGCCACAGTTTGAGCTACATAGGGAAGAAAATATGAAACTACAATAGACTGACTGACCACTTTAGAGTTATTTCCGTTCTGTTCACCAATTTGTTTTTCTGTAAAAGTCCAGATAGTATTTTGGGGTTTGCAGGCCATATGGTCCCTGTCTCAACTGCTCAACTTTGTTGTTAGACCATGAAAGCAACCTCAGTGCACCACCAGATGGGCGTGGCCGTGCTCCAGTGAAACTTTACTAAAACAGGCATCTGCCTGGACTTGCCCCTCAAGCTTGCTCTAGAGTTTCCTCTCCTGAAGCGGGTCAGCGTCTTTGCTGCTCAGTTGCTTTCTGTAATGGGTGTTGACAGAAGAGGTTCCCTAGAGTTAGGCCAATAATTAAAGAAAATCAAGTTCGGTCCCTTCCAAAGGGAAAGATTTAAATATCAAAGGGTTAAGAGAGGCCTCTGGTGACGCTGTCAAATATTCAAATGACTTTACGATTTCACGGCACAAAATCCAGCGTCGCTGGTGGAGGATGTCACCCAGCATGTTAGCATACAATTTTCCTGAGAAAATTAGAGCATAATAAATCAGTATGTGATTCATACTTGGTTCATTCTTACCATGTAATTACAACTGTAATTTAGATTTTTAAAATTATCTAGGATAAAATATATTTTCCTGATTTCTGCTTTTATTTTTCTAAGATAAAGCCCCAATCAATCAAAATATGTCTTCAAGTAATAGTCTCTGTGAAATGGTGTTCCCATTTTAAGTAGGCTGCCTTTTCCCAGCACTAATTATGCTCAGATAACGAGGGCCCCGGTACCTTTTCTGCTCGAGGGTGAGAAGGAACTGACTTTGAAGGCTGTGTGTCAGTTCTGTGTTTCTGGATCTTGCTTCTGCAGAGGGGTGGTAAGGGCCAAGCCTGGTGAGATCTTCATTTGAAACATGAAAATTTCTCTGCAAGGCAGGCCAGGGCTGGGTGGAGGGTTAGATCGTTCACAAGAAAAGGTCCCACTACTTTCAATTGCTCATGTTTTTTGAGCCTAGTCCGCTGTTTGCATTGGCCCTGCTCTGTCTCCTGATTGGATCAGGTTTGAGTTCTACACCTCTAGCACAAAGGCTCTTGGAAAGCCACCTCGAGAGGTGACCGACAGAGGCCCAAAAGTGGGGCAGATTTGGCAACTGACAGTAACGAGTACAGGCTTAACCCCTAAAGGAAGACTTCCTGTGAACTTTAGGCTCTGGAAATTACTAGGTCAGCGGGGTGGAGTATGCGAATTACGATGTCAAACTGACCTGTACTGGAGTCCTGGCCTCTCTGCATCTCCGTCCTCTTGTCTGTACAATGAGGGTCACCTGTTCCTGGCATGCCGAGCTGTTAGCATGATCTGACGAGCTTACACAGCACTTGACATGGCAGGTGCTCAGCAGAAAGCCTGCCCCGAGACTAGGAAACTTGACTTCTCTTTGCTGTTAGCTCTGCCTTCTTTCTGTCCTTACTCTCGAGGTAAACACAAAGCCTGAAGGACTCCAGGTGGGGATCTGTTTCTAATAACCTGTGGTGAGATGGGCATGGGGATGGCTCAGCTCCCCACCTCCCTCTCCTGTTG
Seq C2 exon
TCATAGCCCCAACAAGCGAGGCCCGCCGACGTACAACGAGCACATCACCAAGCGCGTGGCCTCAAGCCCGGCGCCTCCCGAAGGCCCCAGCCACCCTCGAGAGCCAAGCACACCCCACCGCTACCGCGAGGGGCGGACCGAGCTGCGCAGGGACAAGTCTCCGGGCCGCCCCCTGGAGCGCGAGAAGTCCCCCGGCCGGATGCTGAGCACGCGGAGGGAGCGCTCCCCCGGGCGGCTGTTTGAGGACAGCAGCAGGGGCCGGCTGCCCGTGGGGGCCGTGAGGACCCCGCTGTCCCAGGTCAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008963:ENSBTAT00000061505:50
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.262 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0078017=CNH=PD(5.4=24.6)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development