HsaINT0035556 @ hg38
Intron Retention
Gene
ENSG00000122966 | CIT
Description
citron rho-interacting serine/threonine kinase [Source:HGNC Symbol;Acc:HGNC:1985]
Coordinates
chr12:119690151-119697838:-
Coord C1 exon
chr12:119697659-119697838
Coord A exon
chr12:119690455-119697658
Coord C2 exon
chr12:119690151-119690454
Length
7204 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACC
5' ss Score
8.66
3' ss Seq
CGTTCCTCTTGTGTCGCCAGCAG
3' ss Score
5.99
Exon sequences
Seq C1 exon
GACCCCTGCCCGAGCGTACCTGGACATCCCGAACCCGCGCTACCTGGGCCCTGCCATTTCCTCAGGAGCGATTTACTTGGCGTCCTCATACCAGGATAAATTAAGGGTCATTTGCTGCAAGGGAAACCTCGTGAAGGAGTCCGGCACTGAACACCACCGGGGCCCGTCCACCTCCCGCAG
Seq A exon
GTAACCAGCTTCTCCTCTTCCTCAGTACCAGGGGCAACGTGCTTTTCTGCAAGGCAGAAGGAAGTGATACTAAACCAGTAGAATGTTTCCCAATCTTCACTTTGTTCTTAAGCTCAAACCATTCATTTGTTTGCGATCTGCGGCACTGAAATAACACAGACCATTATGAGCATCAGGAGAATTAGAAAATACCACCTTGCAAAAGTCAGAGGGGAGAGGTCTGATCTTTCTCTCCTGGGTATTTTCATTGGCTTGGTGAGAAATGGAGCACAAATTAGGCATTTATTGCTTTAGCAGGTATTCTGCGGTGCTAGTTGTTGGGCTTGTGGGGGAGGGAGAATGGTGAATAAAGCAGATGTAGCCCCTCCCTGATGGCACTCACAGCCCAGTGGGAGAGATGCTGGCAATCAGAGATTAAGGCATGGAAGGATGAGGCCCTGGTGGGGTGGTTGAAAGCCTGGACGTGGAGGTGAGGGAGGATTTCCCATCAGATACGAGGTGGGGGCAGGGAGACCAGTGAGGGGTGCTCAGGCAGGAGGGAAGGCAAGCCATGCCTGGAGGTCCAGAGATGTGAGGTCGTGAGAGCAGGTCAGGGACTCCTGGCCAGCCTCGTGCCTTCCCTGGAATGCGAGACCTCCTGAACAGGATTGGACTCAAACAGCCATTGATAAAGAAGCAGTTAAATAAATTAAAGTACAGCCCTGGGAAGGAATGTTGTGCAGGCATCTGGGGAAAAGAATGAAGAACTCACACTGACATGGAGCAATCGCCAAGACACATCAAGGTACAGGAGAGTATGCAGATATGCTGCCACTTGTATTAAAAAGGAGGGGAGGTGGTGCGGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGGTGAGGGCTGGCAGATCACTTGAGCCCAGGAGTTCAAGACCAGCCTGGGCAATGTGGTAAAACCCTATCTCTACAAAAAATACAAAAATTAGCCAGGTGTGGTGGTGTGTGCCTGTAATCCCGGCTACTCTGGAGGCTGAGGTGGCGGGGACTGCTTGAGCCCTTGAGGCGGAGGTTGCCGTGAGCTGAGATCACACCACTGTACTCCAGCCTGGGCACAGAGTGAGACCCTATCTCAAAATCAAAAAAGGATGGGAAGGGCACTTCCAGAATTTCAGAGTAAGGACCTCTGATAACCTGTTTCTCCATAAAGGCAACGGGACCACTGGCAATTATCAAAATCAACTTTTCAGAGCTCTGGAAATTAACCCTAGCCCTCTGAGTGGTCTCTGTCAAGGCAGAGTCAAACCAAAAGAGTCAGGAGCACATGGGTATTTGGCACCTCTGCTTTTCCAGCAAGTTCCTGGGATCAAAACCACATTGAACAAGCATGTTCCAAAAAAAGGCCTCTTCTTAAAAGGCATTCTTTTTAAATTTTACTTCTTTTTGAATTGATAATCTAACCACAGGGCACAGAATTCAAAGGATAAGAAAGGTGTACAGTACAGAGCCTCTCTTCTGGGTCTCTCTTGCCTCCTAACTCTCCTCACTCCCTCTCCCCAGGTCCCCACCTGGGAAGGAACCAATTTTTTGAAGTTTTTGTGTTTCCGTTTAGGGATCCTTTATGCCAATACAGCCAGCCCTCTCTGTCTATAGGTTATGCCTCTGTAGATTCAATAAACCATGGATTGAAAATATTTGAAAAAATAATTGTGTTTGTACTGCACATGTTCAAGCTTTTACAAATTGTCATTATTCCCTAAACAATATAGTATAACAGCTATTTACAGAGCATTTACATTGTATTAGGTGTTATAAGTAATCTAGAGATGATTTAAAGTGTACAACAGGATGTGTGTAGGTTATATGCAAATACACTCCCCCTACTTTTTTTTTGGGACAGGGTCTCTGTCATCTAAGCTGGAATGCAGTGGTACCAGCTCACTGCAGCCTCGACCTCTGGGCTCAGGTGATCCTCCTACCTCAGCCTGATGAGCAGCTGGGATTACAGGTGTGTGCCACCACACCCAGCTAATTTTTGTATTTTTTGTAGAGATGGAGTTTTACCATGTTGCCCAGGCTGGTCTCAAACTCCTGGGCTCAAGTGATCTGCCCGCCTTGGCCTCCCAAAGTGCTAGGTTTATAGGCTTGAAGCACTGTGTCTGGTCCTACACCATTTAATATAAGAGATGTGAACATCCATAGATTTTGGTACCCACAGGAAGTCCTGGAAGCAGTCCCCCAGGCCACCAAGGGACAACTGTACAACCAAATGTACAGTCAGATCCACTGCCCTGAGAATGGGTCTTTTCCACGGAGCGTCGCTAGGCAGGTCAGATAGCAACAGTTTTCTGGGGATGGGGCTTTTTGGGGAGCTTCAATCCTGATCTGCTCCCTCTAGTGGCTACTAGACTGCTGGTTTTCACAGCTACTGTGGTTCCAAGGACATTGGTTTCAACTCTTCCACAGATCTGGGGAGAGGGGAGTGGGTATGGGGCAAGTTGAATGTCACAAAACATTCGGTTCTTGCTGAGATTCCTTTGTTTTTCTTGCATAAACACTCTTTGAATTGTTGCAGGCCTTTTTTGCAACATGCTTGTTCAGTGTGGTTTTGATCCCAGGAACTTGCTGGAAAAGCAGAGGTGCCAAATACCCACGTGCTCCTGACTCTTTTGGTTTGACCCTGCCTCGAGAGTGGCCGCGCAAAGGGCTAGGGTTAATTTCTAGAGCTCTGAAAAGTTGATTTTGACAACTGCCAGTGATCTTGTTGCTTTTATGGAGAAACAGGTTGTGAGAGGTCCTTAGTCTGGCATTCTGGAAGTGCCCTTCCCCTCCTTGTTTATTTATTTTTTATTTTTATTTATTTATTTTTTTTCGAGGTAGGGTCTCACTCTGTGCCCAGGCTGGAGCACAGTGGCGTGATCTCGGCTCACTGCAACCTCCGCCTCCTGGGCTCAAGAGAGCCCCCGACTTCAGCCTCCCCCCGAGTAGCTGGGACTACAGGCGCCCGCCACCACACCTGGCTAATTTTTGTATTTTTTGTAGAGACAGGGTTTTACCACATTGCCCAGGCTGGTCTTGAACTCCTGGGCTCAAGCAATTTGCCTGCCCTGGCCCCCCAAAGTGCTGGGATTACAGGTGTGAGCCACTACACGCAACCACCCCTCCTTTTTAATACAAGTGGCAGCATATTCTGCATACTCTCCTGTACCTTGATGTGTCTTGGCGATTGCTCCGTGTCAGTGTGAGAAGTAGTTATTCATTCATTTCTCCCCAGATGCCTGCACAACCTTCCTTATCAGGGCTGTACCTTAATTGGTTTAACTGCTTCTTCATTAATGGCTGTTCGAGTTGTCTCCAATCTGTTGCTGCAATAAATGACTTTCTCCTTACGTCATTTTACATGCTGAGGAATCTATCTGTAGGATAAATTCCTAGAAAAGTGTGGGTGAATGGGTGATGGCTGATGTGGATTTGTAAATCTGATGGACAGTGTGGAGTTTTCTGCCCTGAAGGCTTCTCCCATTTGCCATCCCACCAGCTGCGTGTGGAAGTGGGACTGGCCTCGTCTTGACACAGTGCTAGGAGCTAGATCCAGCTCGAGGTGTAGGAAGTTTGAAACCTTGGCCTGCAAAGAAGGTCTGAGATTATTTAACCCCGGGAATAAATGACCTAAGATAATCTTCTGGATTATTATAAGGTGTGTCTACCTTCTAAATAGTTATGTGGACTCCATACCATGTGCCCGACATAATGTCTATGGCTGGGGATACAGAGATGTAGAAAGCATGTTCTTATATTCCAGGAGCCCATAATTTGGTGGAAGAACCACAACTAATATTACAAAATACCAAGATCTTGGGCAAGACTGTCCTAATGAATAATCTCTCTTTTGTTGATGTATAGGAGTTAATTAATCTGAAATGTTTGGTTAGTGTGGTTTTAACCTGAGGAACTTGCTGAAAAACCAGAAGTGCCAATAATTAAATGCTCCTAACTCTTGGCTTGGCCCTGCTTCAAGAGTGACTGCTCAGTGCACCACAGTCCTCCCCTGAAAATGTCTAGATCTTTTTTAAGTAGTTCCCAAGTCATGCCAGAAACACATTGAAATATTGTAATTAGATTTTTTTCCTCCGTTGCCTCACTGGATAGGTGGCCAGGCACCTTGCTTTTGAGATTATATAGTCTCTCAAAGGAGTTGCTTACTGTGCGATCAAAACAGTTCCAGTTCCTGAGAACGAGGGGCAGAAAAGTGTTTGCTTTCCTGTGGCATGTCTGGAAAATCAGTAGTTGGTTATCTCTTGGCTTATAGAATGATCTTTTGGTCGCTGACTTCTTTGGGCAGTTGAGAATGTAGAAGGTTGGCTTTCTGGGTCTGATTCACTGCAGGCTTCGTTGCCCTGGTCTGTTTAGCAGAGCAGGAAACGTAACTCCTTGCCAAAAAACCATAAAATTGATGTGGTAGATTATGGGTCATTAATGGATAAGGAGATGGAAGACTGCCCACTTGGCTTGGAATGACGGGTGTGTTCCTTCCTCCCGTTAATCTCAGCTGACGTCCTGAATGGCCTTCCCTTGAGCAATCCTTCTTCCCCTGGCCAGTGAGCACCCTCTCATTTGTTTTATGATAGTTTCTTGTGGACACATCTTATCATTTCTTTTCCATTACAAGTAGGCTTAATGTAGTTCTCCTACTCGGAATTTATTTTTTTGTTTGTCTTCCAGATTTCAAAGCCATATGGCTAGAGATGAATATAAACCTTGATTTCAAGATGTTGAAATCTGAGTTATCTTAAATCTTACTGCTGCAGAGACAGGGGTTCTGGCCTTCTGAGCATTCGTTGTCTGAATCTCCAAACGTTACAGTTGCATGGGAAAGCAAGAGCATGGCATGAAACTATTCACTATGAACTGAGCCCTTATGAAATTATCTCTGCACACCAACTTCTCTGTTATATTGTAGAGGAGGAATTGGCAAACTTTTTCTGCACAGGTTTAGATGGTAAATATTTTCGGCTTTGTGAGCCATATGGTCTCTGTCTCAGCTGCTCAACCCTGTTGTGGTCATGCGGAAGCAGCTGTAAGACAATGCATAACCAGATGGGCATGGCTTCATTCCAATAAAACTGTATTTATAAAAACAAGCATCTTCCGGATTTGGCCCTCAAGCCTGTTCTAGAGTCTCTCCTTCCACAATAAACACTGTCTTTGCTGTCGCTTCTCAATTATGGACGTTGACAGAAGAGGTTCTGATACAGTTAGACCAATAATTGAAGAAAGAAATGAACAAGTTGATAAAATTATAGCCTCTTCCAATGAGAAGGATTTAAATATCAAGGATTAAGATAGTCCTTTGGGAAAACACTTTTCTTGTTTTAATTTTTAGTTTTAGTTTTTTAGAAGCGGGGTCTTGCCATATTGCCCGGGCTGGTCTTGAACTCCTGGGCTCAAGCAATTCTCCTTCCTTAGCCTTCCTAATAGCTAGGACTACAGGCATGCATCACTGTGCCCGGCTTTTTCAAATATTTTTGAAGAGCCTTCTTTAGGATCCACTGCAAAAGTCCAATGTGTCCAACGTTGGTGTCAGAGCATGTTAGCAGCAATTTTGTTGAGACAATTAGCACAAAACAAATCATTCTGTGATTCATGCTTGGTTCATTTTTGGAATCAGCATGTAATTGCATTGTAATTTAAATACTAAAAATATCTAGCATAAAATAAGTTTATATTCCAAGATAAAGCCTCAATCAAACAAAATATGTTTTCAAGTAATATTCACTGTAATTTTTTTCCTCCATTTTAAGTAGGGCCTTTTCCAAGCACAAATTATGCTGAGATAATAGGGACCCTAGTACTTTTAGAGCTGATCAAGGGTGGGAAAGAATTGACTCAGAAGGCCACATTTCAGTTCTCTCTGTGTTTGTAGGTCTTACTACATCTTCAGAGAGGGAGTTTGGCCCCTGGGTCTGCTGAAATCTTCATTTGAAATATCCAGGCCAGGAGTGGGTGGAGGATTGGGTTGGGTTGTACAAAAAGGCCGCAGTGTTTTCAACTGCTTGGTTACTAATTATCAACCTTTGAGGCCTGGGACGTTTTCTGAGCCCGCTTTACTTTGTCTGCCCTGCTCAGTTTCCTGACTCTATCAGGCCTGATCCCTACACCTCTCGGTCGTCTTATTGTCATGACTGAGAACCATCCACCTTCTGAGCATCTGCATTTGCATCAGGTGTCAGAGACTCTTGGAAAGCCACATGGGGGCAGAGGTGACCAAACACGAGGCCCAGGAGTGGGACAGACATGGCAGTTAACAGTGATCAGTACAGGGTTTCTCCAAACTGCTTCCTTGCACTGAGGGCCTTTGTGGGTCCCTGACTTCTGGGTCTTAGTAGGCTGACCTCCTAGTTGATGACTTCCTTCTGTGCCTTCTAGGCTCTGGGAAATAGTAGGTCAGTAGGATATTATATGGGGCTTATGACATCAAACTGGTCTTTTTTTTTTTTTTTTTTTTTTGAGACGGAGTCTTGCTCTGTCACTTAGGCTGGAGTGCAGTGGTCCGATCTTGGCTCACTGCAACCTCCGCCTCCCCAGTTCAAGCAATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGACTACAGGCACACGCCAACACGCCCGGCTAATTTTTGTATTTTTAGTAGAGACGGGGTTTCACCATGTTGGCCAGGCTGGCCTCGATCTCCTGACCTCGTGATCTACCTGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGTGTGCGCCACTGCGCCTGGCCTATCAAACTGGTCTTTATTGGAATCCCAGCTCTACCACTCATTAGCTCAGGCAAGTCACCTAACTCCTGTCTGTCCCCATTTTCTTGCCTGTACAGTGAGGGTCATGCTTGTTCATAGCTCAGGAGCTGCTGTGATGATTTAATGAGATAATGAGAGATGGCAGATGAAGAACTTAGCACAGGCCTGGCACACAGTAGGTGCTCAGTAAATGAAAGCCTGCACTGAGGAAGGTGGGTTGTCTTTTGTTGCCATCTTTGCTCTCTTCCCTGTCTTTGCTACCAAAATCAAATGCAGGCAAAGTCCAAAGAACTCCAGGTCTAATCTCTTGATAATCAGTGGTGAGGCTGGGTCAAGGAGGGGGTTGCTCAGGTAAGAAGGAAAATGCCCCTCTGGGGTTGTGGCCTCGCAGCTCCCTACGTTCCTCTTGTGTCGCCAG
Seq C2 exon
CAGCCCCAACAAGCGAGGCCCACCCACGTACAACGAGCACATCACCAAGCGCGTGGCCTCCAGCCCAGCGCCGCCCGAAGGCCCCAGCCACCCGCGAGAGCCAAGCACACCCCACCGCTACCGCGAGGGGCGGACCGAGCTGCGCAGGGACAAGTCTCCTGGCCGCCCCCTGGAGCGAGAGAAGTCCCCCGGCCGGATGCTCAGCACGCGGAGAGAGCGGTCCCCCGGGAGGCTGTTTGAAGACAGCAGCAGGGGCCGGCTGCCTGCGGGAGCCGTGAGGACCCCGCTGTCCCAGGTGAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000122966:ENST00000261833:45
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.311 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0078017=CNH=PD(3.3=14.8)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development