MmuINT0036577 @ mm9
Intron Retention
Gene
ENSMUSG00000029516 | Cit
Description
citron [Source:MGI Symbol;Acc:MGI:105313]
Coordinates
chr5:116447683-116456100:+
Coord C1 exon
chr5:116447683-116447862
Coord A exon
chr5:116447863-116455790
Coord C2 exon
chr5:116455791-116456100
Length
7928 bp
Sequences
Splice sites
5' ss Seq
CAGGTACTG
5' ss Score
9.04
3' ss Seq
TGACTCCTCCTTGTCCCCAGCAG
3' ss Score
7.64
Exon sequences
Seq C1 exon
GAGCCCTGCCCGAGCATATCTGGAAATTCCAAACCCTCGCTACCTGGGCCCCGCGATTTCCTCCGGAGCGATTTACCTGGCCTCCTCATACCAGGACAAGTTAAGGGTCATATGCTGCAAAGGAAACCTCGTGAAGGAGTCAGGCACTGAGCAGCACCGGGTGCCCTCCACCTCCCGCAG
Seq A exon
GTACTGAGTCTCCTTCCCTCCGCCATGTGAAGACACTCAAGGAAAAGCATCAGACTGGGGAGGGCTCCTGGTCACAGCGGCAGGGAGCCTCTGGCATTTCCCTGAGGGAGCCAGCCTTCAGTGGCTCTGTAGAGAAAACGGCTCCAGACTCATGCTTCCTTGCTTTGCTCTGTGTCTGTGGTAGTGGCTGCTGAGCCCCAGGGAACCCTGTGGCCCCTTCTTCGTGCTGCTTACGCCCAGTGCAAGAGGCAACTGGAGCCCTTGGTCTAATCCTGATGCTAGAGCACTAGAGCACTGTGGGGGCTCACAGCAGGACCCGCAGCCTAGACTTAGGACCAGGAAGGAAGCTAGGGGGGGGGGGGCATCGGAAGGGCAGGGAGGCAAAGCAGGCAGAGGGGAGGTCCTGAGGAGTGGGGCAGGGGTGGGGGCGGGAGTGGACAGTGGCTTCCCAGGCCACCTGGAGGCTTCTATGGAACCCGAGAACGCTTCAGAGTTCTATTTTATTTTATAACTTGTATTTAAATTTGTGTTGGAAATCTAACCCCCAGATGTAGTACCCAAAGGCCACAGAAAGTATTAAATAGTAGTCTCTTTGGTTTCTTTTCTTTCTTACTTTTTTTTAAAAATAAAGATTTATGTATTTTTATTTATTTTTGTTTTATTGAGATAGGGTCTCATTTTGTAGCCTTAGCTGGCCTGGAAGTCACTATTATGGACCAGGCTGGCCTCTAACTCATAGAGGTCATCAGCCTCTGCCCCTCTGCCTCTGCCCCTGCCCCTCTGTCCCTCTGCCTCTGCCCCTGCCCTTCTGTGCCTCTGCCCCTGCCCCTCTGTCCCTCTGCCTCTGCCCCTGCCCCTCTGTCCCTCTGCCTCTGCCCCTGCCCCTGCCCCTCTGTCCCTCTGCCTCTGCCCCTGCCCCTCTGTCCCTCTGCCTCTGCCCCTGCCCCTCTGTCCCTTTGCCTCTGCCCCTGCCCCTCTGTCCCTCTGCCTCTTCCCCTCTGCCCCTGCCCCTCTGTCCCTCTGCCTCTGTCCCTCTGCCCCTGCCCCTCTGTCCCTCTGCCTCTGCCCCTCTGCCTCTGCCCCTGCTCCTCTGCCCCTGCCCCTCTGCCTCTGCCCCTGCCCCTCTGCCCCTCTGACTCTGCCCCTGTTCCTCTGCCCCTGCCCCTCTACCTCTGCCTCCAGACTGTGCTACTTTCACCTGGCTCATTTTTTTAAATTCTATTTTATGCATATGAATATTTTGCCTGCATGTATGTGTGTGCCTCTTACCCAAGGAGACCAGAAGAGGGTGTCTAATCCACTGTAGCTGGGGTTACAGACAGTTGTGAACTGCTGTATGGTTGCTGGGAATTGAATTCAGGTCCTCTGAAAAAAAACCAAAAAGCCAGCGCTCTTAACTGCTGAGCCATCAGTCTAGCAGCCTGCCCCTTAGTTTAAAGAGATAATGACCTTGTCATGTCCCCATGTGTCTTAGTTAGGGTTTTACTGCTGTGAGCAGACACCATGACCAAGGCAACTCTTATAAAGGACAGCATTTAAGTGGGGCTGGCTTACAGGTTCAGAGGTTCAGTCCATTATCATCAAGGCGGAAGCATGGCAGCATCCAGGCAGGCATGGTGCAGGAGGAGCTGAGAGTTCTACATCTTCGTCTGAAGGCTTGCTAGAAGACTGGCTCCCACGTGGTTAGGAGGAGAAGGGTCTCATTGCCCACCCCCACAATGATACACCTACTCCAACAAGGCCATACCTCTTAATAGCACCACTCCCTGACCCAAGCATATACAAACCATCACATTCCACTCCCTGGCCTTCATAGGCTTGTTCAAATGAATGAGTTTATGTCCACACCTAAACATAGCATAATGCAAAGTACATTTGATCCAACTTCAAAAGGTCCTATAGTCTATAGCAGTCTTAACAACATTAAAAGTCCAAAATTCAAGGTCCCTCTCTTCTGATATCCACCCAGTCACTTAACTGTAATCCCCAAAGCAAGACAGGAAACCAGCTGGGCAGACTCCAAACTCTGCATCTCCTTGTCTGATGTCAAAGATCTCCACTCCCTTTTCATCTTTGTTGACTGCAACAAACTCCTCTCTCTGGGGCTGGTTCCACTCCCTGGTAGCAGCTTTCCTCAGCAGATAGTCCATGGCTCTGACATCTCGAACATCTTGGAGACCCAAGGCAACTTCAACTTGACACCTTCTTGTTTCAATGTCTGGGATCCACACATGATCTGGGCTCCTCCTAAGGGCTGGTGTCACTGCCCCAGCTCTGCCCTCTGTATCTCTCTAAGCTCAGGTTGATCCACTTCACTGCTGCTGCTGTTCTTGGTGGTCATCCCATGGTACTGGCATCTCCAATACACTGGGGCCTTAGACTGCAACTAGGCTTCACCAATAGCCTCTCATAGGCTCTCTTCATGGTCCTCAAATCCTTTTCATGACCCCTTCAGTTCTGGGCCGTCAGCTGCAACTGAGGCTGCCTGTTCACCGGTAGCCTTCCATGGCCTCTCACAGTGCCAAGCCTCAGCTGTTCTTCATGATCCCTTCATGCCTTCAAAACCAGTACCACTAGGTGACAGCTGCTGCAGCCCGAGGTATAACTTTAGCTATCTCTAGAACACAGCTTCTTTGTGCTCTCAGAAAACACTTCCCAGAAGATTTTTAAATCATTTATTTATTTTATTTATAAGAGTATACTGTAGCTATCTTTAGACACACCAGAAGAGGGCATCAGATCCCATTATAGATGGTTGTGAGCCACTATGTGGTTGCAGGGAATTGAACTCAGGACCTCTGGAAGAACAGTCAATGCTCTTAACCGCTGAGCCATCTCTCCAGCTGGTCTCTTCTTAATCACCGCTCCAGCTAAGTAGCATCCTTCTCCCCTTGACTATCAAGTCAGAGACACATGGCCAAAGCTGCTGAGTTTTGCTGCTTGCAAGAGCTGGAACATGAACCCCTTGTTCTATTACATTATCACTTGCTTCTTCTTTTCCAGCTCCTTCACTGCCTAAGCTTGGCTGACCTGGATCTTGCTCTGTAGATTGACCTTGAACTCAGAGATCTGCATGTCTGTCTCCTGGGATTAAAGTGTGTACCACCATGCCTGGATCTAAATTTAGCTGGGTGGGGTCTTGCCCCCAAATCTCTTAATCTGTTATCTCCTAGAACATAATAGATTCATTTCCATGTGCCCCTTTAATACTTGAACCATATATTTTATACTTTCCCTTTCTAAGCTTGCTTCACTTGTTCAAAATGCTCTTCATGAGACTTAACCAGAGAACAAAGTCTCTACTGGGCTTTTGTGAGACTTCCTTTGTCAATGCAATTAATATAAATAAATCTCTTTACCTTAGACTCAGGCAGACTCTTCAGACAAGGGCAAGATACAGCTACTCTCTCCACGACAATACAACAAAAGCAGTCTCTAGGCCACATTCTGAAATTCTTCTCCACTGAATCCTCTTGGGCCCGGGCAGCACAGTTCAAATCACTCACAGCAACAAAGTCTTCCATATTCCTACTAGGATGGCTCACAAGCCCCACTCAAAGCATCCCAAAGCTTTCCAAATCCAAAGTCCCCAAATCCACATTCTTCCAAACAAAAGCATGGTCAGGCCTATCACAGCAATACCTCAGTCCCTGGTACGAACTTCTGTCTTAGTTAGGGTTTTACTGCTATGAGCAGACACCATGACCAAGGACAACATTTAATTGGGGCTGGCTTACAGGTTCAGAAGTTCAGTCCATTATCATCAAGGCAGGAACATGGCAGCATTCAGGCAGGCATGGTGCAGGAGGAGCATGCATGAGAGTTCTACATCTTCATCTGAAGGTTGCTATCAGAATACTGGCTTCCAGGATGAGGGTCTTAAAGCTCATACCTACAGTGACACACCTACTCCAACAAGGTCACACCTCCTAATAGTGCCACTCACTGATTCAAGCATATCCAGACCATCACACCATGCTACCCTGAACTCCTGGCTCAGACATTCTTCTCCCCTCATTCCTCAAGGATCTGAACCTCTCTTCTTCCACCACCACCACCACCCAGGAAGAAACCAAATTATCTTTCTGCATATATATGTGCACATGTCCACATGTGCAACTCTATAAAAACAATACCATGTATGAGTCTGTTTTCTGGCACTATGACAATGAAATGCTGAGTTATAAAGAAAAGAAGCTCATGGTACTTGTCTTAGTCAGGGTTCTATTCCTGCACAAACATCATGACCAAGAAGCAAGTTGAAGAGGAAAGGGTTTATTCAGCTTACACTTCCACGCTGCTGTTCATCACCAAAGGATGCAGGACTGGAACTCAAGCAGGTCAGGAAGCAGGAGCTGATGCAGGGGCCATGGAGGGATGTGACTTACTGGCTTGCTTCCCCTGGCTTGCTCAGCTTGAACCCAGGACTACCAGCCCAGGGATGGCCTTGCCCACAATGGGCTGGGCCCTCCAGCCTTGACCCCTAATTGAGAAAAATGCCTTACAGCTGGATCTCATGGGGTCATTTTCTCAAGGGAGGCTCCTTTCTCTGTGATAACTCCAGCTTATGTCAAGTTGACACACAGAACCAGCCAGTACAGTACTGTTCTATAGTCGATGACCCACATAGTAAAAAGACAGAGACCAACACACTTTTTTGGCTTTTCTGTCTCTATATCCAACCCTGCTCATGTCCCAAAGGCAATGTCTCCACATCTAAATACCACAATTAAATTCCATTTCAACCCTCTTAACATCTCACTGTGAGGAGGACTAGAGAGATGGCTTATTGGTGTGTGTGTGTGTGTGTGTCTTTGAGAGGACTAAGGTTTGGTTCCTAGCACCCACACCAGGAGTCTTCCAACAGGTAGCAGGGGATCCACCACCCTCTTCTGATCTCCAGCATCTGCAAGCACACTATGCTCTTAAATTCACACAGGCACAGGCACATCAAACTCTACTCTCGCACAGTGGGGAGTACATTTTTACACTTGAACCCTCCAGTCCCCTGGGTCCCACTGTGTTCTCTACTGCGATACCTGCCTACCATAAAGACACCCTGCAAGGTGTACAGTTTAGTGGTCTGAGCATGTTTGTAAATGTATTAAGCCTCCACCAATATCTGAGTTTAAAATGTTTCCATCACTCCCCAAAAAAGTTTGTTTTCCTCTGTGTCAGCGACTGCCTCCAGCCTTGTTCCACTTTCAGCAAGGGCTACTGTTCATTTGTCAGGTGGGGCCTCTTCTTGTCCAGCAAGCCCCCAGGTTCAGCCCAACAAAGACAGCCCTGAGTGTCTGTATAGATTTTCCAGGTCAGATATCGATCCCTTTTCTGGAAGTGAGCTTATGAGACACTGGAGCCTGTCTGTGCCTTCCAGATGTTTCAGGCTGCTGATTCTTCGTGGTGGCTGTCAGTTCTCCCATCGATCCAGGGAGAGGCACGGGCCCAGGGCATGCTAAGTCGTCATTGAGCCTTAGCAAGGTCAGTTTTCTTGCAAAAATGCTGTTGGATTGCTCCAAGCTGGTTTTGCAATCCTTTTGGTCAGCATGCATGAGTGTGCACATGTGCGTGGTTTTTTTTTTTTTTTTTTTTGGCAGTACTGAGAATTGAACCCTAGTACTGGCATAGTAGCCAAGGGCTCTGCCACTGCGCCACCCCTGCACCCCAGCCTTGGTCGGTGTGGTTTTAGTCAGTCCAGGACCTTGATGGGACAAGTGGTAGAGTTCTGTGCACTCTTTTTCCGTACCTTAACATGTCTGAGCGGTGGCTTTACCTCTTCGTCGCTGTGGTTTTAACCATGGGAATGTGCTAGGAGAGGCCAGCGCCAATGCCCTTTGACTTGATCCCATCCCCAGAGTGATAGCACAACGGGCCAGTGTGCACCCCTAAAGTGCCTAGAACCTTGGTGTCATTTCTAACTCATGCCAGAGAGGGCTCCAAATGTTGGCAGTAGGCTTCCCCATGGCCGTGCACCCCACGTGGCCCACTGCTGGCTCCAGGTGCTGTGAATGGGAAAGGGGTAGCCTGCCGGCTTTCCCCAGGGGTGCCCCCCTCAAGCCCCACTTCCGCCAATCATCCAATCATCGCTGCTCCTGGCTGCTGTGGGCGGGTCAGAGTATCTATAATTGGCTTGGCGGCTGTGACCCCGAGTTTCCTGGTCTGTTTAGCAGACCCGGGGACCATAACTCTGCAGAAACCATAAAGTGGACGTGGTAGCTCATTGGCCATTATGGATACGGAGATGGAAGACTGCCCAGTTGGCCTGGAGTGATGAATGCTGTCTCTGCCCTCATTAATCTAAGCAGCCATCCCGAGTGGCCTTCCCGAAGCCACCCTGCTTCCCAGGACGCAGAGCTCCCTCCAGCTCCCTCCCGCTAGCCTTAGGATGGGCCCCTGTGGATGCACGCTCGAAGGTCTCTTTCATTACAAAGAGGCTTAATGTATTTCTCTCCCTTGGGTTTATTTGTTCTAATGCATCTTCTGTCTCTCCGAGCTCTGCAGCTCCAGGAGGCATTTGATTCCAGGGTGTAGAAATCAGCTCCCTTACATATAATACCCCAGAGACATGAAGTCAGCTGGCTTTCAGAGCATTTATCTGAATCACTAGTTAGCACACTGGATGCGGAGGCGAGGCCACAGCCGAAAGCTGTTCACGACCAGCTGACACTTAGAAGATCAGTTTTGCAAACCCGGTGTCCTGGTTTTCAGCTCCTTCCCGCAGCAAGTTCCCGCCATGCCCGGGCTGAGTGTTGGATTGATCCTACCAAAAGGTTGCAGTGTCCGGGGCTTGGTGAAGAGGGTTGTAGTTCCCAAGTAGACGGCTTGTGTGGCATGCACAAGGCCTTGGCTTCAAGTTTTAGTACCACTGAAAAAAGAGTCCTTGTGACCTCAGTGGACCAGAGGATCAGAGATGGCTAATGGTTAAGCTCTGGGTCAGGTTGGGTTTTTTTGAGCTAGCTGGACTATCTGTGTCTGTCGTTTGGTTTCCTAATTTCCCTAGGTGTCATCCCTCTGTCCATAGGCCATCTTGTCATTGCCATGGTTCGGGGCCATCAGCCTTCTGAGCAGCTGTATCAGTTGCCATAGAAACTTGGAAAAACCACCGGTGGGGAGAGGTGACCAAACGCTGTTATAGATCCAGGCACCCCTGCCCCCTCTCACCACAGCCCTTGGTGGGCCTCTAATTTCTGAGTTTCTATAGGCTTAGCCCCTAACAGGAGACCCCTGGGAAATATTAGGTTGGTATGATAGAGCCAGGAGATCATGATACCGGGCTGACCTCGCTTTGGCCCCTCAGCAGCTCACTGGGCCGCTTCCACCTCCATGCACCTGCCTGTGCAGCAACAAGAACTTGTTACCATTTGGCGTTGTTATGAGACAGCAAGGGCCTTGCTGAGGCAGGAGCATGGTGAGGATGCAGTAAGTGGGAGCTGGCACAGACACCTAGAAGTCTGGGGTTCTCCTGTCCTCGTCCTCAGGTCTCAGCTTTTCCTAGTAAGAGGGAATGGTAGTTGTTATGCCTCTAACCCAGCCCTTAGGAGCTGAGGCAGGAGGATCATGACTTAGAAGCCAGCCTGGGCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGTCTTTTGAGACAGGGTTTTTCTGTATAGCCCTGGCTGTCCTGGAACTCACTTTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCGCCTGCCTCTGCCTCCCGAGTGCTGGAATTAAAGGCGTGTGCCACCACGCCCGGCTTCAGCCTGGGCTTTATAGTGTGTTCCAGACCAGCTGAATACATACTGAGTGAGACCCTGTCTCAAAAATTAAACCAAATGAACAGTGTTGAAAAGGGTCCCGGGTGGATACTTAGAGGGGACAGGAGCTACAGCTTTGGGCCTGTGACAGCTCCTGACTCCTCCTTGTCCCCAG
Seq C2 exon
CAGCCCCAACAAGCGAGGCCCACCAACATACAACGAGCACATCACCAAACGCGTGGCCTCCAGCCCGGCGCCACCGGAAGGCCCCAGCCACCCCCGAGAGCCAAGCACACCGCACCGCTACCGAGACAGAGAGGGTCGGACAGAGCTGCGCAGGGACAAGTCTCCAGGCCGCCCTCTGGAGCGGGAGAAGTCCCCAGGCCGAATGCTCAGCACTAGGAGAGAGCGGTCCCCAGGGAGACTGTTTGAAGACAGCAGCAGGGGCCGGCTGCCTGCAGGAGCAGTGAGGACCCCACTGTCCCAGGTTAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029516-Cit:NM_007708:45
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.230 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0078017=CNH=PD(5.4=24.6)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: