HsaINT0035556 @ hg19
Intron Retention
Gene
ENSG00000122966 | CIT
Description
citron (rho-interacting, serine/threonine kinase 21) [Source:HGNC Symbol;Acc:1985]
Coordinates
chr12:120127956-120135643:-
Coord C1 exon
chr12:120135464-120135643
Coord A exon
chr12:120128260-120135463
Coord C2 exon
chr12:120127956-120128259
Length
7204 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACC
5' ss Score
8.66
3' ss Seq
CGTTCCTCTTGTGTCGCCAGCAG
3' ss Score
5.99
Exon sequences
Seq C1 exon
GACCCCTGCCCGAGCGTACCTGGACATCCCGAACCCGCGCTACCTGGGCCCTGCCATTTCCTCAGGAGCGATTTACTTGGCGTCCTCATACCAGGATAAATTAAGGGTCATTTGCTGCAAGGGAAACCTCGTGAAGGAGTCCGGCACTGAACACCACCGGGGCCCGTCCACCTCCCGCAG
Seq A exon
GTAACCAGCTTCTCCTCTTCCTCAGTACCAGGGGCAACGTGCTTTTCTGCAAGGCAGAAGGAAGTGATACTAAACCAGTAGAATGTTTCCCAATCTTCACTTTGTTCTTAAGCTCAAACCATTCATTTGTTTGCGATCTGCGGCACTGAAATAACACAGACCATTATGAGCATCAGGAGAATTAGAAAATACCACCTTGCAAAAGTCAGAGGGGAGAGGTCTGATCTTTCTCTCCTGGGTATTTTCATTGGCTTGGTGAGAAATGGAGCACAAATTAGGCATTTATTGCTTTAGCAGGTATTCTGCGGTGCTAGTTGTTGGGCTTGTGGGGGAGGGAGAATGGTGAATAAAGCAGATGTAGCCCCTCCCTGATGGCACTCACAGCCCAGTGGGAGAGATGCTGGCAATCAGAGATTAAGGCATGGAAGGATGAGGCCCTGGTGGGGTGGTTGAAAGCCTGGACGTGGAGGTGAGGGAGGATTTCCCATCAGATACGAGGTGGGGGCAGGGAGACCAGTGAGGGGTGCTCAGGCAGGAGGGAAGGCAAGCCATGCCTGGAGGTCCAGAGATGTGAGGTCGTGAGAGCAGGTCAGGGACTCCTGGCCAGCCTCGTGCCTTCCCTGGAATGCGAGACCTCCTGAACAGGATTGGACTCAAACAGCCATTGATAAAGAAGCAGTTAAATAAATTAAAGTACAGCCCTGGGAAGGAATGTTGTGCAGGCATCTGGGGAAAAGAATGAAGAACTCACACTGACATGGAGCAATCGCCAAGACACATCAAGGTACAGGAGAGTATGCAGATATGCTGCCACTTGTATTAAAAAGGAGGGGAGGTGGTGCGGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGGTGAGGGCTGGCAGATCACTTGAGCCCAGGAGTTCAAGACCAGCCTGGGCAATGTGGTAAAACCCTATCTCTACAAAAAATACAAAAATTAGCCAGGTGTGGTGGTGTGTGCCTGTAATCCCGGCTACTCTGGAGGCTGAGGTGGCGGGGACTGCTTGAGCCCTTGAGGCGGAGGTTGCCGTGAGCTGAGATCACACCACTGTACTCCAGCCTGGGCACAGAGTGAGACCCTATCTCAAAATCAAAAAAGGATGGGAAGGGCACTTCCAGAATTTCAGAGTAAGGACCTCTGATAACCTGTTTCTCCATAAAGGCAACGGGACCACTGGCAATTATCAAAATCAACTTTTCAGAGCTCTGGAAATTAACCCTAGCCCTCTGAGTGGTCTCTGTCAAGGCAGAGTCAAACCAAAAGAGTCAGGAGCACATGGGTATTTGGCACCTCTGCTTTTCCAGCAAGTTCCTGGGATCAAAACCACATTGAACAAGCATGTTCCAAAAAAAGGCCTCTTCTTAAAAGGCATTCTTTTTAAATTTTACTTCTTTTTGAATTGATAATCTAACCACAGGGCACAGAATTCAAAGGATAAGAAAGGTGTACAGTACAGAGCCTCTCTTCTGGGTCTCTCTTGCCTCCTAACTCTCCTCACTCCCTCTCCCCAGGTCCCCACCTGGGAAGGAACCAATTTTTTGAAGTTTTTGTGTTTCCGTTTAGGGATCCTTTATGCCAATACAGCCAGCCCTCTCTGTCTATAGGTTATGCCTCTGTAGATTCAATAAACCATGGATTGAAAATATTTGAAAAAATAATTGTGTTTGTACTGCACATGTTCAAGCTTTTACAAATTGTCATTATTCCCTAAACAATATAGTATAACAGCTATTTACAGAGCATTTACATTGTATTAGGTGTTATAAGTAATCTAGAGATGATTTAAAGTGTACAACAGGATGTGTGTAGGTTATATGCAAATACACTCCCCCTACTTTTTTTTTGGGACAGGGTCTCTGTCATCTAAGCTGGAATGCAGTGGTACCAGCTCACTGCAGCCTCGACCTCTGGGCTCAGGTGATCCTCCTACCTCAGCCTGATGAGCAGCTGGGATTACAGGTGTGTGCCACCACACCCAGCTAATTTTTGTATTTTTTGTAGAGATGGAGTTTTACCATGTTGCCCAGGCTGGTCTCAAACTCCTGGGCTCAAGTGATCTGCCCGCCTTGGCCTCCCAAAGTGCTAGGTTTATAGGCTTGAAGCACTGTGTCTGGTCCTACACCATTTAATATAAGAGATGTGAACATCCATAGATTTTGGTACCCACAGGAAGTCCTGGAAGCAGTCCCCCAGGCCACCAAGGGACAACTGTACAACCAAATGTACAGTCAGATCCACTGCCCTGAGAATGGGTCTTTTCCACGGAGCGTCGCTAGGCAGGTCAGATAGCAACAGTTTTCTGGGGATGGGGCTTTTTGGGGAGCTTCAATCCTGATCTGCTCCCTCTAGTGGCTACTAGACTGCTGGTTTTCACAGCTACTGTGGTTCCAAGGACATTGGTTTCAACTCTTCCACAGATCTGGGGAGAGGGGAGTGGGTATGGGGCAAGTTGAATGTCACAAAACATTCGGTTCTTGCTGAGATTCCTTTGTTTTTCTTGCATAAACACTCTTTGAATTGTTGCAGGCCTTTTTTGCAACATGCTTGTTCAGTGTGGTTTTGATCCCAGGAACTTGCTGGAAAAGCAGAGGTGCCAAATACCCACGTGCTCCTGACTCTTTTGGTTTGACCCTGCCTCGAGAGTGGCCGCGCAAAGGGCTAGGGTTAATTTCTAGAGCTCTGAAAAGTTGATTTTGACAACTGCCAGTGATCTTGTTGCTTTTATGGAGAAACAGGTTGTGAGAGGTCCTTAGTCTGGCATTCTGGAAGTGCCCTTCCCCTCCTTGTTTATTTATTTTTTATTTTTATTTATTTATTTTTTTTCGAGGTAGGGTCTCACTCTGTGCCCAGGCTGGAGCACAGTGGCGTGATCTCGGCTCACTGCAACCTCCGCCTCCTGGGCTCAAGAGAGCCCCCGACTTCAGCCTCCCCCCGAGTAGCTGGGACTACAGGCGCCCGCCACCACACCTGGCTAATTTTTGTATTTTTTGTAGAGACAGGGTTTTACCACATTGCCCAGGCTGGTCTTGAACTCCTGGGCTCAAGCAATTTGCCTGCCCTGGCCCCCCAAAGTGCTGGGATTACAGGTGTGAGCCACTACACGCAACCACCCCTCCTTTTTAATACAAGTGGCAGCATATTCTGCATACTCTCCTGTACCTTGATGTGTCTTGGCGATTGCTCCGTGTCAGTGTGAGAAGTAGTTATTCATTCATTTCTCCCCAGATGCCTGCACAACCTTCCTTATCAGGGCTGTACCTTAATTGGTTTAACTGCTTCTTCATTAATGGCTGTTCGAGTTGTCTCCAATCTGTTGCTGCAATAAATGACTTTCTCCTTACGTCATTTTACATGCTGAGGAATCTATCTGTAGGATAAATTCCTAGAAAAGTGTGGGTGAATGGGTGATGGCTGATGTGGATTTGTAAATCTGATGGACAGTGTGGAGTTTTCTGCCCTGAAGGCTTCTCCCATTTGCCATCCCACCAGCTGCGTGTGGAAGTGGGACTGGCCTCGTCTTGACACAGTGCTAGGAGCTAGATCCAGCTCGAGGTGTAGGAAGTTTGAAACCTTGGCCTGCAAAGAAGGTCTGAGATTATTTAACCCCGGGAATAAATGACCTAAGATAATCTTCTGGATTATTATAAGGTGTGTCTACCTTCTAAATAGTTATGTGGACTCCATACCATGTGCCCGACATAATGTCTATGGCTGGGGATACAGAGATGTAGAAAGCATGTTCTTATATTCCAGGAGCCCATAATTTGGTGGAAGAACCACAACTAATATTACAAAATACCAAGATCTTGGGCAAGACTGTCCTAATGAATAATCTCTCTTTTGTTGATGTATAGGAGTTAATTAATCTGAAATGTTTGGTTAGTGTGGTTTTAACCTGAGGAACTTGCTGAAAAACCAGAAGTGCCAATAATTAAATGCTCCTAACTCTTGGCTTGGCCCTGCTTCAAGAGTGACTGCTCAGTGCACCACAGTCCTCCCCTGAAAATGTCTAGATCTTTTTTAAGTAGTTCCCAAGTCATGCCAGAAACACATTGAAATATTGTAATTAGATTTTTTTCCTCCGTTGCCTCACTGGATAGGTGGCCAGGCACCTTGCTTTTGAGATTATATAGTCTCTCAAAGGAGTTGCTTACTGTGCGATCAAAACAGTTCCAGTTCCTGAGAACGAGGGGCAGAAAAGTGTTTGCTTTCCTGTGGCATGTCTGGAAAATCAGTAGTTGGTTATCTCTTGGCTTATAGAATGATCTTTTGGTCGCTGACTTCTTTGGGCAGTTGAGAATGTAGAAGGTTGGCTTTCTGGGTCTGATTCACTGCAGGCTTCGTTGCCCTGGTCTGTTTAGCAGAGCAGGAAACGTAACTCCTTGCCAAAAAACCATAAAATTGATGTGGTAGATTATGGGTCATTAATGGATAAGGAGATGGAAGACTGCCCACTTGGCTTGGAATGACGGGTGTGTTCCTTCCTCCCGTTAATCTCAGCTGACGTCCTGAATGGCCTTCCCTTGAGCAATCCTTCTTCCCCTGGCCAGTGAGCACCCTCTCATTTGTTTTATGATAGTTTCTTGTGGACACATCTTATCATTTCTTTTCCATTACAAGTAGGCTTAATGTAGTTCTCCTACTCGGAATTTATTTTTTTGTTTGTCTTCCAGATTTCAAAGCCATATGGCTAGAGATGAATATAAACCTTGATTTCAAGATGTTGAAATCTGAGTTATCTTAAATCTTACTGCTGCAGAGACAGGGGTTCTGGCCTTCTGAGCATTCGTTGTCTGAATCTCCAAACGTTACAGTTGCATGGGAAAGCAAGAGCATGGCATGAAACTATTCACTATGAACTGAGCCCTTATGAAATTATCTCTGCACACCAACTTCTCTGTTATATTGTAGAGGAGGAATTGGCAAACTTTTTCTGCACAGGTTTAGATGGTAAATATTTTCGGCTTTGTGAGCCATATGGTCTCTGTCTCAGCTGCTCAACCCTGTTGTGGTCATGCGGAAGCAGCTGTAAGACAATGCATAACCAGATGGGCATGGCTTCATTCCAATAAAACTGTATTTATAAAAACAAGCATCTTCCGGATTTGGCCCTCAAGCCTGTTCTAGAGTCTCTCCTTCCACAATAAACACTGTCTTTGCTGTCGCTTCTCAATTATGGACGTTGACAGAAGAGGTTCTGATACAGTTAGACCAATAATTGAAGAAAGAAATGAACAAGTTGATAAAATTATAGCCTCTTCCAATGAGAAGGATTTAAATATCAAGGATTAAGATAGTCCTTTGGGAAAACACTTTTCTTGTTTTAATTTTTAGTTTTAGTTTTTTAGAAGCGGGGTCTTGCCATATTGCCCGGGCTGGTCTTGAACTCCTGGGCTCAAGCAATTCTCCTTCCTTAGCCTTCCTAATAGCTAGGACTACAGGCATGCATCACTGTGCCCGGCTTTTTCAAATATTTTTGAAGAGCCTTCTTTAGGATCCACTGCAAAAGTCCAATGTGTCCAACGTTGGTGTCAGAGCATGTTAGCAGCAATTTTGTTGAGACAATTAGCACAAAACAAATCATTCTGTGATTCATGCTTGGTTCATTTTTGGAATCAGCATGTAATTGCATTGTAATTTAAATACTAAAAATATCTAGCATAAAATAAGTTTATATTCCAAGATAAAGCCTCAATCAAACAAAATATGTTTTCAAGTAATATTCACTGTAATTTTTTTCCTCCATTTTAAGTAGGGCCTTTTCCAAGCACAAATTATGCTGAGATAATAGGGACCCTAGTACTTTTAGAGCTGATCAAGGGTGGGAAAGAATTGACTCAGAAGGCCACATTTCAGTTCTCTCTGTGTTTGTAGGTCTTACTACATCTTCAGAGAGGGAGTTTGGCCCCTGGGTCTGCTGAAATCTTCATTTGAAATATCCAGGCCAGGAGTGGGTGGAGGATTGGGTTGGGTTGTACAAAAAGGCCGCAGTGTTTTCAACTGCTTGGTTACTAATTATCAACCTTTGAGGCCTGGGACGTTTTCTGAGCCCGCTTTACTTTGTCTGCCCTGCTCAGTTTCCTGACTCTATCAGGCCTGATCCCTACACCTCTCGGTCGTCTTATTGTCATGACTGAGAACCATCCACCTTCTGAGCATCTGCATTTGCATCAGGTGTCAGAGACTCTTGGAAAGCCACATGGGGGCAGAGGTGACCAAACACGAGGCCCAGGAGTGGGACAGACATGGCAGTTAACAGTGATCAGTACAGGGTTTCTCCAAACTGCTTCCTTGCACTGAGGGCCTTTGTGGGTCCCTGACTTCTGGGTCTTAGTAGGCTGACCTCCTAGTTGATGACTTCCTTCTGTGCCTTCTAGGCTCTGGGAAATAGTAGGTCAGTAGGATATTATATGGGGCTTATGACATCAAACTGGTCTTTTTTTTTTTTTTTTTTTTTTGAGACGGAGTCTTGCTCTGTCACTTAGGCTGGAGTGCAGTGGTCCGATCTTGGCTCACTGCAACCTCCGCCTCCCCAGTTCAAGCAATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGACTACAGGCACACGCCAACACGCCCGGCTAATTTTTGTATTTTTAGTAGAGACGGGGTTTCACCATGTTGGCCAGGCTGGCCTCGATCTCCTGACCTCGTGATCTACCTGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGTGTGCGCCACTGCGCCTGGCCTATCAAACTGGTCTTTATTGGAATCCCAGCTCTACCACTCATTAGCTCAGGCAAGTCACCTAACTCCTGTCTGTCCCCATTTTCTTGCCTGTACAGTGAGGGTCATGCTTGTTCATAGCTCAGGAGCTGCTGTGATGATTTAATGAGATAATGAGAGATGGCAGATGAAGAACTTAGCACAGGCCTGGCACACAGTAGGTGCTCAGTAAATGAAAGCCTGCACTGAGGAAGGTGGGTTGTCTTTTGTTGCCATCTTTGCTCTCTTCCCTGTCTTTGCTACCAAAATCAAATGCAGGCAAAGTCCAAAGAACTCCAGGTCTAATCTCTTGATAATCAGTGGTGAGGCTGGGTCAAGGAGGGGGTTGCTCAGGTAAGAAGGAAAATGCCCCTCTGGGGTTGTGGCCTCGCAGCTCCCTACGTTCCTCTTGTGTCGCCAG
Seq C2 exon
CAGCCCCAACAAGCGAGGCCCACCCACGTACAACGAGCACATCACCAAGCGCGTGGCCTCCAGCCCAGCGCCGCCCGAAGGCCCCAGCCACCCGCGAGAGCCAAGCACACCCCACCGCTACCGCGAGGGGCGGACCGAGCTGCGCAGGGACAAGTCTCCTGGCCGCCCCCTGGAGCGAGAGAAGTCCCCCGGCCGGATGCTCAGCACGCGGAGAGAGCGGTCCCCCGGGAGGCTGTTTGAAGACAGCAGCAGGGGCCGGCTGCCTGCGGGAGCCGTGAGGACCCCGCTGTCCCAGGTGAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000122966-CIT:NM_007174:45
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.311 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0078017=CNH=PD(3.3=14.8)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)