RnoINT0036632 @ rn6
Intron Retention
Gene
ENSRNOG00000001143 | Cit
Description
citron rho-interacting serine/threonine kinase [Source:RGD Symbol;Acc:70878]
Coordinates
chr12:46336176-46342098:-
Coord C1 exon
chr12:46341919-46342098
Coord A exon
chr12:46336483-46341918
Coord C2 exon
chr12:46336176-46336482
Length
5436 bp
Sequences
Splice sites
5' ss Seq
CAGGTACTG
5' ss Score
9.04
3' ss Seq
TTCCTTATTGTCCCCAGCAGCCC
3' ss Score
5.66
Exon sequences
Seq C1 exon
GACCCCTGCCCGAGCCTATCTGGAAATCCCAAACCCTCGCTACCTGGGCCCCGCAATTTCCTCCGGAGCAATTTACCTGGCCTCCTCATACCAGGACAAGTTAAGGGTCATATGCTGCAAAGGAAACCTCGTGAAGGAGTCTGGCACTGAGCAGCACCGCGTGCCCTCCACATCCCGCAG
Seq A exon
GTACTGAGGCTCCTTCCCTCCTCCACGGGAAGATGCTCAGGGTAAAGCATGCTTTCGTGTCTGGCCATCATCTTAAGCATCACAGGGATTGTGGAGGGCTCCTGCTCACAGCGGCAGGGAGTGTCTGACATTTCCCTGAGGGAGTCTTCAGTGGCACTGTCCCCAAGAACAACTCAAGACTTATGCTTCCTTCTTTGATCTGTGCCTGCTGTGATAGCAGCTGAGCCCCAGGGAAACCTGTGGCCCCTCCTTCAGGCTGCTCATGCCCAGTGCAAGAGGAAAGCAACTGGAAGCCTCAGTCTAATCCTGATGGGCCCACTAGAACACTGTGGGAGCTCCCCAGAAAGCCTGCAGCCTAGAATTGGGACCAGGAAGGACTTCCCCAAAGAAAGAAACCAAGGGAGGGGCATCAGGAGGGCAAAGAGGCGAGGCAGGCAGAGGGGAGGTCCTGAGAAGTGAGGCGGGGCTGGGTTGGTGTGGGGCCGTGGCCACTGAAGGCTTCTATGGAACCTGAGAACTCTTCAGTTCTAATAGTTTATTTTAAAACTTGCATTTATCTTTGAAATCTAACCCCCAAAGGGCACAGAAAGTATTAAGTAATAGTCTCTTTGGTTTCTTTCTTATGTTTAAAAAACAAACAAAGGGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGGAAGCGCAAGGCCCTGGGTTTGGTCCCCAGCTCCGAAAAAAAGAACCAAAAAAAAAAAAAAAAAAACAAACAAACAAAGATTTATGTATTTTTATTTATTTTTGTTTGATTGAGATAAGGTGCCACTTTGTAGCCTTCACTGGTCTAGAGCTCTATATTGTGGACCAGGCTGGCCTTGAACTCAGAGAGATCTTCTGCCTCTGCCTCTGCCTCTGCCTAGACTGTCTACTTACGCACCAGCTCTTTTTTTTTTTTTTTTAATTTTTATTTTATGTATTTGAGTATTTTGCCTGCATGTATGTGTGTGCTTGGAGACCAGAAGAGGGTGTCAGATCCTCTGTAACTGAAGTTACAGACAGTTGTGAGCCGCCATGTGGGTGTTGGGAATTGAATTCAGGTCCTCAGTGTTCTTAACTGCTGAGCCATTGGTGCACCTGCCCCTTCATGTAAAGAGATGATGGTCTTGTCAAGTTTCCAAACTACCCTGAACTCCTGGCTCAGACAGTCCTTTCCCCTCAAGGATCTGAGAATCTCCTTCTTCCTCCCCCTCACACCACGGCCAGGGAAGAAGGCAAATTTGTTTCTATTCAGACATCTTTCTGCATATACACAAGCACAAGTCCATGTTTACTACGCCATAAAAAACGATACCTTATATCAGTCTGCTTTCTGGCACTACCACTAAATGCCTGATGCTGGGTTACTTATAAAGAGAAGAGGGGCATGGGACTTGTCTCAGTCAGGGTTTCTATTCCTGCACAAACCTCAGGACCAAGAAGCAAGTTGGGGAGGAAAGGGTTAATTGAGCTTACACTTCCACATTGCTGTTCATCACCTAAGGAAGTCAGGATTGGAACTCAAGCAGGGCAGGAACTTGGAGGCAGGAGCTGATGCAGAGGCCATGGAGGGGTGTTGCTTACTGGCTTGCTCCCCATGGTTTGCTCAGCCTGCTTTCTTATAGAACCGAGGACCTCCAGCCCAGGGATGGCCCCACCCACAATGGGCTGGGCCCTCCCCATTGATCACTAATTGAGAAAATGCCTTACAGTTGGGTCTCATGGAGGCATTTCCTCAAGGGAGGCTCCTTTCTCTGTGATAACTCCAGCTCGTGTCAACTTGACACACAAACCAGCCAGTACAGAACTGTTCTGAAGTCAAGGATCCACACGTGTACCTGATACGTGGTCTCTGTATCCAACCCTGCTCACATCCTAAAGGCTGTGTCTCCACCTCCCAGGACTACAGTTAAATTCCATTTCAACCAGCTTAACTGCGGAGAACTAGAGAGACCGCTCAGTGGTTAGTGTGACTCTTGCAGAAGACTAGCATTTGGTTCCCAGTGCCCATACCAGGGGCTCACGATATCCGTGACTGGAGTTGCAGGGGATCCGCCACCCTCTTCTGATCTTCTGGGCCACCTGCATGCACACAGTGCACTTAAACTCACACAGGCACACGCATGTCAAACTCCACCAGTATCTAAGTTTAAAATGTTTCTATCACCCCGAAGGAAGTTCGTTCTCCCCTGCATCAGTGACCGGTCAGGCATGTTCCGCCTCAGGCATGTTCCACAGCCAGCAAGGGCTGTTGTTCAACTCTTGGTGGGGCCTCCTCTTGTCCAGCAAGTCCCAGGTTCTGTCTAGCAAAGACAGCCCCGAGTGTCTGTGTAGATTTTCCAGGTCAGATATTGATCCTTTTCTGGAAATGAGCTTTTGGGGCACTGGAGCCTGTCTGTGCCTTCCAGATGTGGCAGGCTGCAGAGTCCTCATGGTGGCTGGCTACAAGCCCACTGGCTTCAGTTCTACCATTGATCTGGGGAGAGGCATGGGCCCAGGGCATGCTAAGTTGTCATTGAGCCTTAGCAAGTTTGGTTTTCTTGCATAAGTGCTGTTGGATTGCTCCAAGCTGGTTTTGCAATCCTTTTGGTCAGCATGCATGAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGGTGTGTGTGTGGTGTGTGGGTTTTTTTTTGGGGGGGGTGCAGCACTGAGAATTGAACCCTAGGCCTGGCACACTAGCCAATGGTTCTGCCACTGTGTCACCCCTGCCCCCAGCCTTGGTCAGTGTGGTTTTAGTTAACCCAGGACCTTGATGGGAACCCTGAAGTGACAGATGGCCAGTTGCTCCCAGCTCTTCTGAAGCTGATTTACAAGGTCTCCAAACACTGTGTTTGTTCTAAGTCCTGTGAGGTTGCTTTTGATGACCTTTGTGTGTCTGGTGTCTGTTCTTTGTTCTCCTGGCCCTCAGAGGTTCTGCACCTCAGCTTCCTTTCCTCCCCCTCCTGAAGGGAAAGTATGTCAGGTGTGGGTGGGGATGGCCTCAGGGCAGTGAAGGAAAGTGGCTTCCTTCTCCTTTCCTGGCCCTAGGGCCCCTGTGCCCTCTATTTCAGGCAATGCTGCGCTTACCTCCCTGGGGCCGCACCTACTTGCAGCCCCAGGAGCTTGGTGTAGAAGTTAGTCGCCTCATCCTGGTCCAGAAGACCAGGAACCAGAGCCACACTGAGTGTGGGGAGCTGGAGACCTTGGTCCCCAGAAGCTCTGAGATTAGCCCAGGGGACTATTTCATTGGCCTGCCCTGTAAGCAGCTGTGAGGATGTCCTGCCCGTTGTGAGACATCATCTGGGACTTTGGAGAGCACTGAGTGCCCACTGAGGGCACACTCCGTATTCTCAAAGGATCAACATCACCAAGTATTCCAGAATCCTTAGGCATGGTAGAAGGCAGAGTGTCTTTAATATTCTCATGCCACGCCAGGACAAGCTGTCTCTCTTATTGATGGGTAGGAATCAACGTGTCTGAGATATGTGGTCCTGCGTCCCCATGCAGGTCACTATTCTGCAAATGGCAGAGTACTACACACTCTATGTTGTACCTTAACATGTCTGAGTGATGTTCACCCCTAAAGTGCCTAGAACCTTGGTGTCATTTCTAAGTCGTGCCAGAAAGGGGTCCGAGTGTTGGGAGTAGGCTTCCTCATGGCTGTGCACCCCACATGGTCCACTGTAAGTACCTGTTGCGTTGGCCCCAGGTGCTGTGAATGGGAAATAAGTAACCCGCTGGCTTCCCCGGACCGGGGTAGGACCTTGGGGGTGGGGTGCAGGGCAAGCCCCACTCCCGCCTACAGTCGGTTCTCACCAATCATTCTTGCTCCTGGCTGCTGTGGGCGTCTCAGAGTGTCTGTGACGGGCTTGACTGGCAGTGATTCACAGCAGGCTCTGTTTTCCTGGTCCAGTTAGCAGAGCAGGGACCATAACTCTGCAGAAACCATAAAGTGGACATGTTAGCTCATTGGCCATTATGGATACGGAGATGGAAGAGTGCCCAGTTGACCTGGAGTGATGAGTGCTGTCTTCCTTTCATTAATCTAAGCAGCTGTCTGGAGTGGCCTTTCCCGAGCCACCCTGCTTCCCGACTCTGAGCTCCTTCCCACTACTCTTAACAGACAGTGCCCCTGAGGACACATTCTGGAATGTCTCTTCCGTTACAATGAGGCATAATGTGTTTCTCGCCTTGAATTTATTTGTTCTAATGTGTCTTCTGTCTGGCCCAGTTCTGCAGCTTGAGGCATTCGAAGACCTTAACTCCAGGGTATAGAAATGAGCTCTCTTGCATTTAATGCCCCAGAGACTGAAGTCTGCTGGCCTTCGGAACATTTACCTGGATCGCCAGTTAGCCCTGTGTGGGGAAGCGAGGCGGCTCACAACTAGCTACACTTAGAGATCGTTCCGCAAACCCTGTTTTCCAGCTCCTTCCCGCAGGCTGTTCAGGCCAGGGCAGGGCTGAGGGTTGGACTGATCCTACTGAAAGGCTCCAGTACCCTGGGACTTGGTGAAGAGGGCTGCAGTTCCCAAGTAGATGGCTTGTGTGGCTGGCTTTGTGTGGCATGCACAAGGCCTTGGCTTCAGGTTTTAGTACCACTACGGAAATGGGTACTCAGAGGGTCAGAAATAGTTAATGGTTACTCTCTGAGCCACGGTGGTTTTTTGAGCTAGCTGGGCTTGTCCCGGTGTGCTTGCTCTGTTTGGTTTCCTAGTCTTACCAGGACTTATCCCTGTGTCTGTAGGTCATTTTATTCCTGTGGCTGGGAAGCACCAGCCGTGTGAGCATCTGTATCAATTGCCACAAAAACCACCCTTGGGGAGAGGGGGCCAAACGCCAGGCACAAGGCCCTAACGGTGACAGCCTTTCTCAAAACTGCTCCCTTGCACCAGGCCCTTGATGGGCCTCTGATTTCCGAGTTGTGATAGGCTCTGGGAAATATTAGGACACCAGACTGACCTCGCTTCGGCCACTCGGTGGGCAGCTAATGGGGCCTCTCCACCTCCGTGCACCTGCCTGTGCGGCGACAAGAACTTATTCCCATTTGCTGATGCATGAGACGGTGAGGGTTTAGCTGAGGCAGGAGCATGTCGAGGATGCAGTAAGTAGGGGCTGGCACCGACACTGGAAGTCGGGGGTTCTGCCCTTGTCCTTGGGTCTAAACTCAAGAGTGAATGGGAGTTATGTCTTTAACCCCAGCCCTCGGGAGCTGAGGCAGGAGGATTGTGACTTTGAAGCCAGCCTGGGCTTTATAGTGACTACATACCGGAGTGAGGCCTGTCTCAAACATTAAACAAACGAACTCTGTTGAAAGGGGGCCTGCTTGGATGCTTAGAGGGGATGGCAGCTGCAGCTTTGGGCCTGTGACGTCACGGCTCCCTGATTCCTTATTGTCCCCAGCAG
Seq C2 exon
CCCTAACAAGCGAGGCCCACCAACATACAACGAGCACATCACCAAACGTGTGGCCTCCAGCCCAGCACCACCAGAAGGCCCCAGCCATCCCCGAGAGCCAAGCACACCCCACCGCTACCGAGACAGAGAGGGCCGGACAGAGCTGCGCAGGGACAAGTCTCCAGGCCGTCCTCTGGAGCGGGAGAAGTCGCCAGGCCGGATGCTCAGCACGAGGAGAGAGCGGTCCCCGGGGAGACTGTTTGAAGACAGCAGCAGGGGCCGGCTGCCTGCGGGAGCCGTGAGGACCCCACTGTCCCAGGTTAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001143:ENSRNOT00000041281:37
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.230 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0078017=CNH=PD(5.4=24.6)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]